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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00119554001 | ||||||||
Common Name | GSBRNA2T00119554001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 311aa MW: 37006.7 Da PI: 6.8143 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.7 | 3.1e-23 | 45 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+ +r+e+++++ ++k++k lWe v +km+++gf rs++qCk+kw+nl ryk ++++e + + ++++p++++++ GSBRNA2T00119554001 45 QWSIDETKELLGIREELDQTFMETKRNKLLWEVVVAKMADKGFARSAEQCKSKWKNLVSRYKVCETTEPE---PIRQQFPFYNEIQ 127 7********************************************************************8...566789***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.98E-20 | 44 | 106 | No hit | No description |
Pfam | PF13837 | 8.5E-20 | 45 | 129 | No hit | No description |
PROSITE profile | PS50090 | 7.445 | 46 | 102 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDRRNPFHHH DHQLYQLIQQ QQLPPPPQST TVAMDLGGGG ERIPQWSIDE TKELLGIREE 60 LDQTFMETKR NKLLWEVVVA KMADKGFARS AEQCKSKWKN LVSRYKVCET TEPEPIRQQF 120 PFYNEIQSIF TARMQRMLWS EPRTSSKRKH NQFSSDEEVE EVAELNQDIN KELLSFVETQ 180 KKDTEVITTS TFTNPKKRAK KGKGTSKAET AGSTLKEMLE DFMRQTVKME KEWRDTWEMK 240 AREKEKREKE WQRRMAELEE ERAAAERRWM EREDERRLRE EARAQKRDTL IDVLLNQLNR 300 DQDDDQHQGF * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00119554001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240935 | 0.0 | AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125422.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3a-like | ||||
Refseq | XP_013731790.2 | 0.0 | trihelix transcription factor GT-3a-like | ||||
Swissprot | Q9SDW0 | 1e-136 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A398A5Y0 | 0.0 | A0A398A5Y0_BRACM; Uncharacterized protein | ||||
STRING | Bo2g001280.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 1e-107 | Trihelix family protein |
Publications ? help Back to Top | |||
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