PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119527001
Common NameGSBRNA2T00119527001, LOC106431790
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 262aa    MW: 30019.1 Da    PI: 6.7916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119527001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.42.9e-23112172259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  GSBRNA2T00119527001 112 HDGFLWRKYGQKQIKESNHQRSYYKCAYTkdqNCEAKKQVQMIQNNPPLYSTTYFGHHTCQ 172
                          6**************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-24104172IPR003657WRKY domain
PROSITE profilePS5081119.152106174IPR003657WRKY domain
SuperFamilySSF1182903.01E-23108173IPR003657WRKY domain
SMARTSM007741.7E-34111173IPR003657WRKY domain
PfamPF031063.5E-23113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNSCQQKAME TLLHGHGCAN QLKLIMDHAK SDSSMEREDL AKSVLHCFSD ALAILIDTYD  60
HHQGDQSNNS SPQDASPVLE NSRKPLHKRG RKTSVAESSD YRRHESPNPI YHDGFLWRKY  120
GQKQIKESNH QRSYYKCAYT KDQNCEAKKQ VQMIQNNPPL YSTTYFGHHT CQLHQAYATF  180
PGDTSDPQDS HMIRFDHPDS SIHQHQNQSQ NQIIYLKDEN MMMLPDKSEE WSSPSQWMSS  240
EVAHAVEAFG FNPFRTSSDL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-151131721069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119527001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728064.10.0probable WRKY transcription factor 62
SwissprotQ9LZV61e-140WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLA0A398A4V10.0A0A398A4V1_BRACM; Uncharacterized protein
STRINGBra028918.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-140WRKY DNA-binding protein 62
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]