PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00118200001
Common NameGSBRNA2T00118200001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 529aa    MW: 59746.1 Da    PI: 6.1969
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00118200001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.65.7e-23229286155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                          k+r++Wt++L e+F+eav+ LGG+ kA Pk +l++   m++kgLt+ +v SHLQkYRl
  GSBRNA2T00118200001 229 KTRVVWTNDLQEKFLEAVNTLGGARKANPKPLLKMledMNIKGLTRRNVCSHLQKYRL 286
                          68****************************877665559******************8 PP
2Response_reg56.91.2e-19141191106
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+v+ + + ++ +++++ k gy +v++ +d+e+al+ l  +e+ ++l++ D  mpg++G+++lk i ++  +lp++++++ +    + +
  GSBRNA2T00118200001  14 VLVVEPNFVTLRKMKNLMIKYGY-QVTVYADAEAALAFLrnCEHGINLVIWDFHMPGINGIQALKIICTKM-DLPVVIMSDDDRTVSVMQ 101
                          899********************.***************555555**********************8865.8***************** PP

                          HHHTTESEEEESS--HHH CS
         Response_reg  89 alkaGakdflsKpfdpee 106
                          a   Ga  +++Kp+ +e 
  GSBRNA2T00118200001 102 ATVHGACYYVMKPIRKEI 119
                          *************87654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.42E-2611136IPR011006CheY-like superfamily
SMARTSM004486.0E-1812123IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-2612135No hitNo description
PROSITE profilePS5011032.90613128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1614120IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.72E-1915123No hitNo description
Gene3DG3DSA:1.10.10.605.5E-21228289IPR009057Homeodomain-like
SuperFamilySSF466891.97E-12228289IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-19229286IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSFLNEFPA SANVLVVEPN FVTLRKMKNL MIKYGYQVTV YADAEAALAF LRNCEHGINL  60
VIWDFHMPGI NGIQALKIIC TKMDLPVVIM SDDDRTVSVM QATVHGACYY VMKPIRKEII  120
ATIWQHIVRK RMMSKSGVIP PVQLDVVQNN DGFKENKDDS MPVDQGNSEQ NINMIGEKAE  180
KKPQIGENLP IQSDSVQNNG SDQDNNDSWT TSPYNSEQNI DGEERKQLKT RVVWTNDLQE  240
KFLEAVNTLG GARKANPKPL LKMLEDMNIK GLTRRNVCSH LQKYRLSLQG KQITQQMQEF  300
GWSSACTTSP LLGLNNVHTA TSSLINGGAS YPVQENQYQN GYMEVNKNKT ASSSLMTGRA  360
TFPVQDNHYQ NGYMEVNNNH AASSSLMNCR ATYPVEDNQY QNGYLGVNNN QVMTNTMPYD  420
FDHDNYLQKQ KLEQQQQYQL SNQMKPEKAS NIDILKDLGL AYTMPRLPYD LGHGNHLQQE  480
QQHQLPHQWN NVMSNNEPEQ ASGNGVTGVE GTYPSLPYDP NDFYSYNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00118200001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614206.10.0PREDICTED: putative two-component response regulator ARR19
RefseqXP_022560240.10.0putative two-component response regulator ARR19
RefseqXP_022566338.10.0putative two-component response regulator ARR19
TrEMBLA0A0D2ZS510.0A0A0D2ZS51_BRAOL; Uncharacterized protein
STRINGBo00904s040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.19e-60response regulator 19
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]