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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00117589001 | ||||||||
Common Name | GSBRNA2T00117589001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 123aa MW: 13222.8 Da PI: 6.4934 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.8e-10 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEd +++ +v+ +G g+W++I+++ g GSBRNA2T00117589001 14 KGHWTAEEDAKILTYVAIHGVGNWSLIPKKAG 45 789**************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.539 | 9 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.22E-11 | 11 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0017 | 13 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-8 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-7 | 17 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MGRPPCCDKS NVKKGHWTAE EDAKILTYVA IHGVGNWSLI PKKAGFESMW KERFSPHEEE 60 LIIQCHRIIG SSGTTSSCSS SSSSSLSINQ GAQAPDTTFC WSDFLLSDPV SPMSSQTQVV 120 GS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. | |||||
Uniprot | TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00117589001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519591 | 1e-52 | AY519591.1 Arabidopsis thaliana MYB transcription factor (At3g28470) mRNA, complete cds. | |||
GenBank | DQ446711 | 1e-52 | DQ446711.1 Arabidopsis thaliana clone pENTR221-At3g28470 myb family transcription factor (At3g28470) mRNA, complete cds. | |||
GenBank | DQ653114 | 1e-52 | DQ653114.1 Arabidopsis thaliana clone 0000017443_0000012156 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477416.1 | 4e-33 | PREDICTED: transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 1e-30 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A3P6DSH2 | 1e-84 | A0A3P6DSH2_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g146330.1 | 2e-70 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 5e-31 | MYB family protein |
Publications ? help Back to Top | |||
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