PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117406001
Common NameGSBRNA2T00117406001, LOC106425436, LOC106425437
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 372aa    MW: 41709.3 Da    PI: 8.1347
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117406001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.7e-40153229177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cq++gCe dls+ak+yhr+h+vCe hsk+p+v v+g+e+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q
  GSBRNA2T00117406001 153 RCQIDGCELDLSSAKDYHRKHRVCENHSKCPKVSVNGIERRFCQQCSRFHAVSEFDETKRSCRKRLSHHNARRRKPQ 229
                          6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-33146215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.197151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-37152229IPR004333Transcription factor, SBP-box
PfamPF031108.9E-31154227IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETD KGEGIESMFP CLWDTPVSKS  60
SQSTSTNSSS PGVKQRMLAS ESSRGDSCCN IDLVQVKASV ASAESDLSLK LGKRTYSEEF  120
WGGNNNNDIS LTPPVVTRKK SKSSCGQSMQ VPRCQIDGCE LDLSSAKDYH RKHRVCENHS  180
KCPKVSVNGI ERRFCQQCSR FHAVSEFDET KRSCRKRLSH HNARRRKPQG VFPFNPDRVY  240
DRRQHTNMLW NGLSLDTRSE EKFAWETTND IKPTQTESGF TLSFQRGNGS EQQLFACSNH  300
SYSAYQTSGG FSAGKPKFQL HGQGVGEYSG VLHESREFHR ALSLLSTSSD HLVQPHAQPL  360
SLLFSYDGVP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-251542271184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117406001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721623.10.0squamosa promoter-binding-like protein 11
RefseqXP_013721624.10.0squamosa promoter-binding-like protein 11
RefseqXP_013721626.10.0squamosa promoter-binding-like protein 11 isoform X2
RefseqXP_022561252.10.0squamosa promoter-binding-like protein 11
SwissprotQ9FZK00.0SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBLA0A3P6EKC50.0A0A3P6EKC5_BRAOL; Uncharacterized protein
STRINGBo7g049950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.40.0squamosa promoter-like 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Stief A, et al.
    Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
    Plant Cell, 2014. 26(4): p. 1792-1807
    [PMID:24769482]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Liu J, et al.
    The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.
    PLoS Pathog., 2015. 11(2): p. e1004629
    [PMID:25658451]
  5. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]