PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117021001
Common NameGSBRNA2T00117021001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 717aa    MW: 78847.1 Da    PI: 6.6584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117021001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.2e-0858100347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  GSBRNA2T00117021001  58 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 100
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1150105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-653103IPR009057Homeodomain-like
PROSITE profilePS5129313.17554105IPR017884SANT domain
SMARTSM007174.6E-655103IPR001005SANT/Myb domain
CDDcd001671.54E-558101No hitNo description
PfamPF002491.9E-658100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MLERSCAMQG EKEVTLSSQG PLEEGRESNQ NSNPNIASSA SIAVPQFPAK KPTRQWAAWT  60
HQEEESFFTA LRQVGKNFAK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK  120
DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSSR KRACHGESFS  180
SASLGNISSH SRERGLDNSP FKLILCDSQN VRPGRASTKH GESLGVRLGD EKEDTALGRV  240
GRQRRKQAGY RKWEKAAIDG VSLVADAAEH LERTSIDKDV NGQKDLGPTR YLTGKSPLSL  300
PSSGEAPLSD ANMQFSAKLK LQLFPIDEST RRSLEADKHN PHLELTLSNR KKISSVLEHL  360
NRKWGSSSCA CGELMLFPYN ARKETVALHQ RWTNDSFLSA VEVYSMVGSP SLFRLRYGWF  420
VQDASGSFIS QVPTSLEDNM NVDAANEDNM LLTESGPLSN KHPTSEPATS VVCDAAEARD  480
NYEPASATIT PFDHLSSVNT LSAGAWADSL TNISIGDLLS EAPDCVDPPT AEGSHCLLRD  540
VSFASDSFDA AIAAHILRHQ NKPSGGLIPV TSGSSSLWDD EDTRDAFSFQ KTRRANLSKF  600
ADVASNGEPS QLVEATSGDE GPCNLPDQQG DPMEEGPADP PTMDSPGKTI YGLADVYWPD  660
SLGPLDLDIR SSKYAEDLNL SDSLGGLSRL IATSLDAFQN CSLFGFDSKK DKSNMV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117021001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143542.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
RefseqXP_013748393.10.0TSL-kinase interacting protein 1-like isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A397ZE990.0A0A397ZE99_BRACM; Uncharacterized protein
STRINGBra005230.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]