PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116991001
Common NameGSBRNA2T00116991001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 399aa    MW: 43710.7 Da    PI: 9.7669
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116991001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29151208360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYG K+vkgs+ pr+YY+Ct+++Cpvkk+vers+  ++v ei Y+geHnh+k
  GSBRNA2T00116991001 151 DGYNWRKYGHKQVKGSDSPRGYYKCTHPKCPVKKRVERSSMGGHVSEILYQGEHNHSK 208
                          9*******************************************************85 PP
2WRKY98.93.2e-31317374259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK v g+ +prsYYrCts +C+++k+ver+++dpk++++tYeg+Hnh+
  GSBRNA2T00116991001 317 GDGFKWRKYGQKAVGGNAYPRSYYRCTSVNCRARKRVERANDDPKAFITTYEGKHNHH 374
                          5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26144209IPR003657WRKY domain
SMARTSM007745.3E-29149208IPR003657WRKY domain
SuperFamilySSF1182902.35E-23149209IPR003657WRKY domain
PROSITE profilePS5081124.398151209IPR003657WRKY domain
PfamPF031061.5E-22151206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-30305375IPR003657WRKY domain
PROSITE profilePS5081129.654311373IPR003657WRKY domain
SuperFamilySSF1182902.09E-26312375IPR003657WRKY domain
SMARTSM007741.8E-35316375IPR003657WRKY domain
PfamPF031062.4E-25318374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDVKESERKV VAKPVASRPS CSSVRTFTDL LADSVTVSPQ SNCHETVDAS IIIPKTERFK  60
QPASASVSSP RVEGSGDVIY KPKSKLVSQA TVSALANMLP GNCQLTWIKR EAVAYGKRVS  120
QGTHRAGPNL IPRVPTFKES ETSTGDRSYV DGYNWRKYGH KQVKGSDSPR GYYKCTHPKC  180
PVKKRVERSS MGGHVSEILY QGEHNHSKPS CPLPRRASSS SSSGFQTPSE GLMGQEPNPL  240
WSNQEKMNEG CVITPFEFAV PRTANSTGGT SDSGCRSSQC DERELDDPSR SKTSMKNEKQ  300
SSEAGVSQSS GESDSLGDGF KWRKYGQKAV GGNAYPRSYY RCTSVNCRAR KRVERANDDP  360
KAFITTYEGK HNHHHLQLRP PTSSTLPFSS PQHSNQAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25151373378Probable WRKY transcription factor 4
2lex_A3e-25151373378Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116991001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300560.0KF430056.1 Brassica rapa WRKY transcription factor 44 (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288885.10.0WRKY transcription factor 44-like
RefseqXP_009143517.10.0PREDICTED: WRKY transcription factor 44-like isoform X1
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A3P5YSM00.0A0A3P5YSM0_BRACM; Uncharacterized protein
STRINGBra005210.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  5. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  6. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  7. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]