PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116801001
Common NameGSBRNA2T00116801001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 402aa    MW: 44339.8 Da    PI: 7.7624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116801001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-1757102147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+W+te d  l ++v++lG+++W++Iar ++ gR++k+c++rw + 
  GSBRNA2T00116801001  57 KGPWSTEQDAVLTRLVNKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 102
                          79******************************.***********985 PP
2Myb_DNA-binding53.84.4e-17109152146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r+++T eE+ ll  a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  GSBRNA2T00116801001 109 RKPFTDEEENLLMSAHAVHGNK-WSVIAKLLP-GRTDNAIKNHWNS 152
                          789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.16552103IPR017930Myb domain
SuperFamilySSF466892.28E-2954150IPR009057Homeodomain-like
SMARTSM007175.0E-1456105IPR001005SANT/Myb domain
PfamPF002492.0E-1557102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2358110IPR009057Homeodomain-like
CDDcd001679.21E-1359101No hitNo description
PROSITE profilePS5129425.502104158IPR017930Myb domain
SMARTSM007171.6E-15108156IPR001005SANT/Myb domain
PfamPF002491.9E-15109152IPR001005SANT/Myb domain
CDDcd001677.29E-12111151No hitNo description
Gene3DG3DSA:1.10.10.605.9E-24111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNSEIVNQTP PETPSTPFYD SSEDAINAAV DFELAAVREV GGDSNGSNGG GGRSKAKGPW  60
STEQDAVLTR LVNKLGPRNW TLIARGIPGR SGKSCRLRWC NQLDPCLKRK PFTDEEENLL  120
MSAHAVHGNK WSVIAKLLPG RTDNAIKNHW NSALKRKHAD LWNNHHNSIS NTVNASSSRK  180
EETNHHPPLV SSTDVKMEDV ASKPREGKPG VYRPVARLGA FSVYRPGYMN QRVTPCEGPL  240
VQAARPGSLG GQFLQSLCYQ PNVPSRCGHG CCNQQPEKRL SSSSVLGLEF VDYEETSSVG  300
LDQELVSIAT DLNNIAWIRS GLNNSYAREV GQRLNADSRF HFEHARARGK FTGMVNNVLV  360
LYFDDKVRDF DVPFQTFESV LLAIELGFYM GEKEEPVVLT C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-36571577107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109821e-40leaf| microspore-derived embryo| root| seed
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116801001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752234.10.0transcription factor MYB25-like
SwissprotO041921e-129MYB25_ARATH; Transcription factor MYB25
TrEMBLM4CLB90.0M4CLB9_BRARP; Uncharacterized protein
STRINGBra005006.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-133myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]