PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116657001
Common NameGSBRNA2T00116657001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 283aa    MW: 30515.6 Da    PI: 4.7094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116657001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1883132255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  GSBRNA2T00116657001  83 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTADMAARAHDVAALAIKG 132
                          69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-3183141IPR001471AP2/ERF domain
SMARTSM003801.4E-3683146IPR001471AP2/ERF domain
PROSITE profilePS5103222.91983140IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2183141IPR016177DNA-binding domain
PfamPF008474.0E-1283132IPR001471AP2/ERF domain
PRINTSPR003676.0E-108495IPR001471AP2/ERF domain
CDDcd000181.97E-3184142No hitNo description
PRINTSPR003676.0E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
METQINMEKS ASQVTFISAV SSSSASLSYS PTTSSSSSSS STSNLGNPKR KASQRSLSSL  60
AVQDLDDQGV KRRKTNGGDK HPTYRGVRMR SWGKWVSEIR EPRKKSRIWL GTYPTADMAA  120
RAHDVAALAI KGTTAYLNFP ELAGELPRPV TNSPKDIQAA ATAAAVNWQD SGGLHVDNSD  180
ITEKTEAEPS GAVMAQSLSD SAVFSSDIIT QELSETSCAS TTSFVDKDSD EEKLFDLPDL  240
FNGGNEIGII RNDAFWYDSS TWQLCGADAG FRLEEPFFCL ND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1778141973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116657001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747975.10.0ethylene-responsive transcription factor ERF034-like
RefseqXP_022574769.10.0ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ71e-116ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A397Z6N90.0A0A397Z6N9_BRACM; Uncharacterized protein
STRINGBra004878.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-100ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]