PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116631001
Common NameGSBRNA2T00116631001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 303aa    MW: 33519.4 Da    PI: 10.0651
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116631001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.72e-2043134187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                          +W+ +e+ aLi+++re++++l+rg+lk+++W++v++++  +  g+  +++++qC++k+e+l++ry+++ +++++   ++ +s++++++++
  GSBRNA2T00116631001  43 CWSLEETTALIDGYREKWHALGRGNLKANHWDDVAEAVaaACPGVapRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVHYKRM 132
                          7********************************9999977334444488*************************977999********** PP

             trihelix  86 ea 87 
                          ea
  GSBRNA2T00116631001 133 EA 134
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-1842135No hitNo description
PROSITE profilePS500906.34244104IPR017877Myb-like domain
SMARTSM005951.7E-951140IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSDPDSPPTH DPIPDRDQPE PASATDPKLP SVPKSSRRLP PPCWSLEETT ALIDGYREKW  60
HALGRGNLKA NHWDDVAEAV AAACPGVAPR KTAVQCRHKM EKLRQRYRAE IQRARSVPVA  120
RFVSSWVHYK RMEAMEITKP DGEENQFSGG GPTPRFFNRN GGGGGGGIRI RIPTGVSIAQ  180
PGPRIEPKSF GISTNPRPGR VVGTGSSYGG RVVGGGSEMK MMCDDTIGSA IKLLGDAMLR  240
TEEKKMEMTR EIEGMRMEME MKRTKMVLES QQRIVEAFAR TMSENLEEEK KMKKARRMSS  300
VE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208215GGRVVGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.60150.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116631001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3155983e-80AJ315598.1 Brassica napus microsatellite, clone Na10-F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143060.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A397ZG030.0A0A397ZG03_BRACM; Uncharacterized protein
STRINGBra004859.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-74Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]