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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00115879001 | ||||||||
Common Name | GSBRNA2T00115879001, LOC106445403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 36745.2 Da PI: 5.5179 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.5e-32 | 160 | 214 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG ++A Pk++l++mkv+gLt++hvkSHLQkYR+ GSBRNA2T00115879001 160 KGRMRWTPELHEAFVEAVNHLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 214 56****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.134 | 157 | 217 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-17 | 159 | 214 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 159 | 215 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-23 | 160 | 214 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-10 | 162 | 213 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-21 | 246 | 290 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
METRNLAHTC SSIPPPDIPI NSQQHNQLIA GPYHHLLSAN GEAVGHIYSN DFPNAASSMV 60 SHEMLDWDDH ADLLDLGVVE EDDELITNEN PIMSPFWNDV FLVASSTSAP KVHESTMQSQ 120 IQQPQVPLQH PSPCVELPPL VRTVSSNSND NTNSTSAAAK GRMRWTPELH EAFVEAVNHL 180 GGMNNAKPKA VLKHMKVQGL TIYHVKSHLQ KYRTARYVSE PSEGSQETKL TPLEHVTSLD 240 TKRGIDINEA LRIQMEVQKQ LHEQLEVQRK MQLRIEEQGK VLLMMFEKQN MDFCKPEQED 300 KASEKTPESC SEEADSPRPK RPRNDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24348 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00115879001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608868.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_013608869.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_022564759.1 | 0.0 | myb family transcription factor PHL4 isoform X2 | ||||
Swissprot | Q8GXC2 | 1e-112 | PHL4_ARATH; Myb family transcription factor PHL4 | ||||
TrEMBL | A0A0D3E3M9 | 0.0 | A0A0D3E3M9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g028250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20400.1 | 2e-94 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106445403 |
Publications ? help Back to Top | |||
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