PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115696001
Common NameGSBRNA2T00115696001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 182aa    MW: 20021.6 Da    PI: 7.1445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115696001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.25.9e-081371655
                         HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +N+ ++ Lr+l+P++    ++K + a+i+  A+++Ik+L+
  GSBRNA2T00115696001  1 MNQHLSALRSLMPQP---FAQKGDQASIVGGAIDFIKELE 37
                         8**************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000102.2E-5137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-7140No hitNo description
PROSITE profilePS5088811.407136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-7149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNQHLSALRS LMPQPFAQKG DQASIVGGAI DFIKELEQQL LSLEAQKLHK AQTNQTATSS  60
TSQDSDGERE NARQPCSLSL SHFFLHSYDP SQENRNGTTS SVRTAMEDLE VTLIETHANI  120
KILSRRRGFR WTTVATTGPP QLLKLMAALQ SVSLSVVHLS VTTLDTFAIY SISTKEQFIT  180
C*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115696001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893140.0AC189314.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610461.11e-123PREDICTED: transcription factor bHLH71
SwissprotQ56XR06e-93BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A0D3E6X61e-121A0A0D3E6X6_BRAOL; Uncharacterized protein
STRINGBo9g065460.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-63beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]