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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00115684001 | ||||||||
Common Name | GSBRNA2T00115684001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 546aa MW: 59903.4 Da PI: 4.6398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.4e-13 | 389 | 434 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L GSBRNA2T00115684001 389 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 434 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.8E-55 | 66 | 252 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 385 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-18 | 388 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.43E-15 | 388 | 439 | No hit | No description |
Pfam | PF00010 | 3.5E-10 | 389 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-18 | 389 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 391 | 440 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MDDHRNRVSL SPPDAHMSNY FLNQSTATDD DNASASMEAF IGTNHWSQQP SLPPPPSLSQ 60 FNEDTLQQRL QTLIESAGER WTYAIFWQIS HDFDSPAGES TVILGWGDGY YRGEEDKEKK 120 KKQSSSSNPA EQEHRKRVIR ELNSLIAGGA GVSDEANDEE VTDTEWFFLV SMTQSFVNGV 180 GLPGESFLNS RVIWLSGSGA LTGSGCERAR QGEVYGLQTI VCIAAENGVV ELGSSEVISQ 240 SSDLMDKVNG LFNGNGGGEA SSWGFNLNPD QGENDPSLWL SEPNITGIEP VQEAPAIENA 300 ADLNFSSSGL NQNGNFKQGS SSNKKRSPVS KDEEMLSFST VVRSAAKSVD SDHSDIEASV 360 VKEAIIVEPE KKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYSLRA VVPNVSKMDK 420 ASLLGDAISY INELKTKLQQ AETDKEEVQK QLDGMSKEGG GSVEMEIDVK IIGWDVMIRV 480 QCGKKNHPGA RFMEALKELD LEVNHASLSV VNDLMIQQAT VKMGSQFFNH DQLKAALMLK 540 VGEDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-115 | 27 | 248 | 8 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-115 | 27 | 248 | 8 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-115 | 27 | 248 | 8 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 370 | 378 | KKPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6979 | 1e-105 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00115684001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352707 | 0.0 | AK352707.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-E20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013743293.1 | 0.0 | transcription factor MYC3-like | ||||
Swissprot | Q9FIP9 | 0.0 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | A0A3P6E5A0 | 0.0 | A0A3P6E5A0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g065530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 0.0 | bHLH family protein |