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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00115420001 | ||||||||
Common Name | GSBRNA2T00115420001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 517aa MW: 55920.9 Da PI: 8.9843 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k F r nL+ H r H GSBRNA2T00115420001 89 FICDVCKKGFQREQNLQLHRRGH 111 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GSBRNA2T00115420001 165 WKCDKCSKRYAVQSDWKAHSKTC 187 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.0E-4 | 88 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.3E-7 | 88 | 111 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-5 | 88 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.014 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 89 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 65 | 130 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 152 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.3E-7 | 160 | 185 | No hit | No description |
SMART | SM00355 | 140 | 165 | 185 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MSTSSYNTSA VPSSSSTQPF FITGSSAGDN AFDRKDTFMS MVQQPNSSAP QPKKRRNQPG 60 NPSNLIDQTD PDAEVVALSP TTLMATNRFI CDVCKKGFQR EQNLQLHRRG HNLPWKLKQK 120 STKEVKRKVY ICPEPTCVHH DPARALGDLT GVKKHYYRKH GEKKWKCDKC SKRYAVQSDW 180 KAHSKTCGTK EYRCDCGTIF SRRDSYITHR AFCDALIQET VRNPTVSFTS MTAASSGAGF 240 RGFHGKLEGG NALSHQHLSD HPNSGFSSFG GYNLNIASSE NSREFAPQTS NPNFLIQCSS 300 SQGMLPAPNN NNNDQSFMNQ QGLIQFDPVN NINLKSSTTN NSFFNLGFFQ ENTKNSETAI 360 PSLYSTDSLV HHREESLNAG SNVSATALLQ KATQLGSITS NDPSALFRSL ASSSNSSSVV 420 VNDFGGGQIM GNDNNGNLQG LMNSLVAVNG GGAGGSGGNI FDVDFGNNNV NMSGSDNLTL 480 DFLGVGGMVR NVNRGGAGRG RVRGDVSLNG ELKFPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-32 | 161 | 227 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 2e-32 | 161 | 227 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.1685 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00115420001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599228.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013599229.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013599230.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013599231.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013599232.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013599233.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013599234.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013736158.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013736159.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013736160.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_013736161.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_022560774.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_022560776.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 0.0 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A3P6EL69 | 0.0 | A0A3P6EL69_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g080200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3678 | 17 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 0.0 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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