PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115304001
Common NameGSBRNA2T00115304001, WRKY3.1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 490aa    MW: 53642.5 Da    PI: 8.2207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115304001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33233289259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers+ d++v+ei+Y+g+H he
  GSBRNA2T00115304001 233 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSQ-DGQVTEIIYKGQHSHE 289
                          8****************************************.***************8 PP
2WRKY105.52.7e-33389447159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  GSBRNA2T00115304001 389 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAASDPKAVVTTYEGKHNHD 447
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29223291IPR003657WRKY domain
PROSITE profilePS5081123.629227291IPR003657WRKY domain
SuperFamilySSF1182909.81E-26230291IPR003657WRKY domain
SMARTSM007741.6E-36232290IPR003657WRKY domain
PfamPF031067.6E-26233288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-36374449IPR003657WRKY domain
SuperFamilySSF1182901.83E-29381449IPR003657WRKY domain
PROSITE profilePS5081137.895384449IPR003657WRKY domain
SMARTSM007742.6E-39389448IPR003657WRKY domain
PfamPF031065.1E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MADKEEQEVE HQQKQPSTLK SSTGAPSRPT ISLPPRPFGE MFFSGGLGFS PGPMTLVSNL  60
FSDPDELKTF SQLLAGAMAS PAAAVAAAAV VATAHQTPVS SVGGSGGDVD PRFKQNRPTG  120
LMIAQPPAMF TVPPGLSPAT LLDSPSFFGL FSPIQGAFGM THQQALAQVT AQAVQGNGVQ  180
IQSQSEYPSS TQQQETSSEP MSQLPALAQR DTVEVSVYEH RSSQPQNADK PADDGYNWRK  240
YGQKQVKGSD FPRSYYKCTH PACPVKKKVE RSQDGQVTEI IYKGQHSHEP PQNKTKRDNN  300
GSSRSSDVAT QFHTSNSGLN KNKRDQETSQ VTTTTEQMCD ASDSDETSVE PDPKRRNMEV  360
RVTEPVTSTQ RTVTEPRIIV QTTSEVDLLD DGFRWRKYGQ KVVKGNPYPR SYYKCTTPGC  420
GVRKHVERAA SDPKAVVTTY EGKHNHDVPA ARNSSHQLRP NNNLHNTTVD NMNQEQRVAR  480
LRLKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-45233450878Probable WRKY transcription factor 4
2lex_A9e-45233450878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.283220.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115304001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465650.0KC246565.1 Brassica napus WRKY transcription factor 3.1 (WRKY3.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561811.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV9LYK90.0V9LYK9_BRANA; WRKY transcription factor 3.1
STRINGBo7g081130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]