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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00115180001 | ||||||||
Common Name | GSBRNA2T00115180001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21837.9 Da PI: 6.9614 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.8e-18 | 2 | 52 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ + +++AeIrdp + + +r+slg+f+t+ eAa+a+++a+ kl+g GSBRNA2T00115180001 2 HYRGVRMRP-WVKFAAEIRDP---NrRGTRVSLGTFDTEIEAARAYDQAAFKLRG 52 69*******.**********9...4334**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.3E-13 | 2 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-26 | 2 | 60 | No hit | No description |
PROSITE profile | PS51032 | 21.47 | 2 | 60 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-29 | 2 | 58 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 2 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 3 | 14 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF55681 | 2.11E-36 | 36 | 195 | No hit | No description |
PRINTS | PR00367 | 7.0E-12 | 42 | 62 | IPR001471 | AP2/ERF domain |
Pfam | PF00152 | 3.7E-35 | 56 | 171 | IPR004364 | Aminoacyl-tRNA synthetase, class II (D/K/N) |
Gene3D | G3DSA:3.30.930.10 | 9.1E-45 | 59 | 196 | No hit | No description |
PRINTS | PR01042 | 4.4E-11 | 87 | 103 | IPR002312 | Aspartyl/Asparaginyl-tRNA synthetase, class IIb |
PRINTS | PR01042 | 4.4E-11 | 131 | 145 | IPR002312 | Aspartyl/Asparaginyl-tRNA synthetase, class IIb |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006418 | Biological Process | tRNA aminoacylation for protein translation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MHYRGVRMRP WVKFAAEIRD PNRRGTRVSL GTFDTEIEAA RAYDQAAFKL RGSKAIVNFP 60 LEALHHPFTA PRPEYMDDLP SARALAYDMV YNGVEIGGGS LRIYKRDVQE KVLEIIGISA 120 EEAEAKFDYL LEALDMGAPP HGGIANGLDR TVMMLAGASS IRDVIAFPKT TTAQCALTRT 180 PSEVDPKQLQ DLSIRTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4wj3_M | 9e-42 | 56 | 195 | 440 | 591 | Aspartate--tRNA(Asp/Asn) ligase |
4wj3_N | 9e-42 | 56 | 195 | 440 | 591 | Aspartate--tRNA(Asp/Asn) ligase |
4wj3_O | 9e-42 | 56 | 195 | 440 | 591 | Aspartate--tRNA(Asp/Asn) ligase |
4wj3_P | 9e-42 | 56 | 195 | 440 | 591 | Aspartate--tRNA(Asp/Asn) ligase |
4wj4_A | 9e-42 | 56 | 195 | 440 | 591 | Aspartate--tRNA(Asp/Asn) ligase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:P14868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00115180001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118754 | 1e-166 | AK118754.1 Arabidopsis thaliana At4g33760 mRNA for putative aspartate--tRNA ligase, complete cds, clone: RAFL21-10-C05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022566922.1 | 3e-94 | aspartate--tRNA ligase, chloroplastic/mitochondrial-like | ||||
Swissprot | F4JJT9 | 3e-83 | SYDM_ARATH; Aspartate--tRNA ligase, chloroplastic/mitochondrial | ||||
TrEMBL | A0A3P5ZV42 | 5e-85 | A0A3P5ZV42_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DM80 | 4e-85 | M4DM80_BRARP; Uncharacterized protein | ||||
STRING | Bra017612.1-P | 7e-86 | (Brassica rapa) | ||||
STRING | Bo1g007870.1 | 3e-84 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-32 | ERF family protein |
Publications ? help Back to Top | |||
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