PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114969001
Common NameGSBRNA2T00114969001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 478aa    MW: 53850.2 Da    PI: 7.6103
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114969001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.6e-29182235155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl
  GSBRNA2T00114969001 182 KRRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 235
                          689******************.********************************8 PP
2Response_reg70.57.2e-2431101109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + +
  GSBRNA2T00114969001   3 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMK 89 
                          799********************.***************999999******************985344..57***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l+Kp++ +el++
  GSBRNA2T00114969001  90 GIIHGACDYLVKPVSLKELRN 110
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-341123No hitNo description
SMARTSM004489.1E-271112IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.42E-301118IPR011006CheY-like superfamily
PIRSFPIRSF0363922.9E-1451419IPR017053Response regulator B-type, plant
PROSITE profilePS5011039.1812116IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-213111IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.66E-2025115No hitNo description
PROSITE profilePS5129413.888179238IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-29180239IPR009057Homeodomain-like
SuperFamilySSF466892.15E-20180239IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25182235IPR006447Myb domain, plants
PfamPF002498.7E-10184234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRVLAVDDNP TCLRKLEELL LRCKYHVTKT MESKKALEML REKSNMFDLV ISDVEMPDTD  60
GFKLLEIGLE MDLPVIMLSA HSDYDSVMKG IIHGACDYLV KPVSLKELRN IWQHVVKKNI  120
GSYKKIIAPS RHLLPTSEYA PSGSGKRKEK ADDSGDGDDD SDRDEEEDGS EQDGDESSNR  180
KKRRVVWSQE LHQKFVHAVQ QLGLDKAVPK KILDYMNIEG LTRENVASHL QKYRLYLKKL  240
DEGQQHNMSQ DAFGSRDSSY FHMAQLEGLR DYSSTRQLSS SSLLTRSSLT KFHPSVYSSV  300
NLQGSNSSSF IPPGHHQSSS SSANPFGTYH SPLLARSQNV NLSPLEPLQF PRSKCSPYMG  360
DFKGIADRGI SSSFLDSRMS FGSSSTSLPC ATSNNLMLQE NFGVSDGNHS HHHDLYFLMV  420
SCKFVPLCVI IKKIVFQSLL TCLYIENLRL VLKQQSGTSL QCAKFKTLEY WLWFGFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-21180240363ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue developing anthers, and siliques. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114969001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240295e-49AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026885e-49CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619374.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A0D3ALA80.0A0A0D3ALA8_BRAOL; Two-component response regulator
STRINGBo2g028820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.11e-170response regulator 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]