PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114923001
Common NameGSBRNA2T00114923001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 292aa    MW: 33112.2 Da    PI: 4.4399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-1316101898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           d + s+rlvlp ++  ++ ++++ ++t +l+ ++g+ W vk     ++++ + +++GW+ F  +n+  +gDf+ F++dg+++f  +v++
  GSBRNA2T00114923001  16 QDLSLSQRLVLPSDYR-QY-YPTPLPQTAVLRKPEGNFWAVKW--GISPEEeISFGDGWSTFIAENDPLDGDFLQFSYDGSRSF--MVSI 99 
                          45556699****9996.55.3566999****************..77777779*************************998888..**** PP

                          E- CS
                   B3  97 fr 98 
                          fr
  GSBRNA2T00114923001 100 FR 101
                          98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-165101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-157101IPR015300DNA-binding pseudobarrel domain
CDDcd100173.14E-127101No hitNo description
PROSITE profilePS5086313.079103IPR003340B3 DNA binding domain
SMARTSM010191.1E-109103IPR003340B3 DNA binding domain
PfamPF023621.3E-1114102IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-5195278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-4195278IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVFTPYPDFL IIYNSQDLSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWAVKWGISP  60
EEEISFGDGW STFIAENDPL DGDFLQFSYD GSRSFMVSIF RGGLPVKPKA PVTIQDISDD  120
DDEDKTAGDD GNEKKEEDYD QNMIISLSLG SSDEEYDADK TVCEVNKAHR TLERGSSSQR  180
IRAQSIGDPE MYLDDPKNPC FIATSSSCRR MLVIAMQVIK DYDLKFDGTI KFIDGFGELE  240
GKIGNWKDRV VVYPWQEIYQ RNHAKPGDVI ICEILREGDV VRSIKAHFVK K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114923001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619395.10.0PREDICTED: B3 domain-containing protein At5g57720
SwissprotQ9FHH11e-110Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A0D3ALD80.0A0A0D3ALD8_BRAOL; Uncharacterized protein
STRINGBo2g029120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-104B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]