PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00114830001 | ||||||||
Common Name | GSBRNA2T00114830001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 284aa MW: 31334.6 Da PI: 6.5701 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.8 | 5.1e-15 | 28 | 88 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ GSBRNA2T00114830001 28 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLeqfgAVGDTNVFYWFQNRRSRSRR 88 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.1 | 2.2e-34 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q GSBRNA2T00114830001 27 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEQFGAVGDTNVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-14 | 22 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.159 | 24 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-6 | 26 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 28 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-12 | 28 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MNQEGSSQSP TGQCRSPSAP SNSTAPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI 60 RKMLEQFGAV GDTNVFYWFQ NRRSRSRRRQ RQLQAATAAA VTSRGAEDQQ HMTPMSMHHP 120 YSNNEINLGF GSCSNSSANY FFNDPSSQVS SFLLGHSSSS SNGGCESNNG MENLFAMYGH 180 ESDHPHLHQH SSNDATISNP SDQNSSFHYQ QGLITVFING VPTEVTEGAI DMKAMFGEDL 240 ALMHSSGLPL PIDEFGFLMH SLQHGQSYFL TIMSRTQFSL YLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00114830001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189450 | 0.0 | AC189450.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126209.1 | 1e-171 | PREDICTED: WUSCHEL-related homeobox 12-like | ||||
Swissprot | Q8GY25 | 1e-120 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A0D3AJL5 | 1e-178 | A0A0D3AJL5_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g013980.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-109 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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