PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00114682001 | ||||||||
Common Name | GSBRNA2T00114682001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 122aa MW: 13977.6 Da PI: 8.7307 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.3 | 1.1e-12 | 2 | 40 | 23 | 57 |
SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+p+ae++e+ +++l +++ ++V++WFqN++a+e++ GSBRNA2T00114682001 2 RTPNAEQIEHVTSQLgeygKIEGKNVFYWFQNHKARERQ 40 89***********************************97 PP | |||||||
2 | Wus_type_Homeobox | 75.2 | 9.6e-25 | 1 | 42 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtPn+e+i+++t++L eyGkie+kNVfyWFQN+kaRerqkq GSBRNA2T00114682001 1 MRTPNAEQIEHVTSQLGEYGKIEGKNVFYWFQNHKARERQKQ 42 79**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 8.924 | 1 | 41 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-10 | 2 | 40 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.4E-7 | 2 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 3 | 40 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MRTPNAEQIE HVTSQLGEYG KIEGKNVFYW FQNHKARERQ KQKRNNLSLS CQGSLSTTSV 60 SNASELLEEN EYKRTCRSWG FENLKIESRR NINSSINATI ATTFNIDNVT LELFPLHPEG 120 R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00114682001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584398.1 | 2e-79 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 2e-57 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A3P6EJW5 | 4e-78 | A0A3P6EJW5_BRAOL; Uncharacterized protein | ||||
STRING | Bra032212.1-P | 8e-78 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5980 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 8e-60 | WUSCHEL related homeobox 4 |