PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00114613001 | ||||||||
Common Name | GSBRNA2T00114613001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SAP | ||||||||
Protein Properties | Length: 458aa MW: 50683.2 Da PI: 7.3431 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 698.8 | 6e-213 | 1 | 456 | 1 | 454 |
SAP 1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrs 89 msssss+s++ +++g ++ + ++s+g +e+ps sr+r +an+vwpePfle+la+qva+das s+ +++n vc+ w+avsrs GSBRNA2T00114613001 1 MSSSSSASDNGNSSGGLSSVA-GRSGGVFEAPSPSRPRhSANDVWPEPFLESLAVQVAVDASFSTSPRLYLLSMFNFSLVCTMWQAVSRS 89 899999888888877655554.67789**********9899*********************98876667788999999*********** PP SAP 90 dllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdlet 179 d+lwq l+r++W+rt+l++dtWr+e+iyrhrtarnf+tr y +vtl+fdp+dvde +d+lsCrcl lsd ylaaGfadG+vrlf l++ GSBRNA2T00114613001 90 DHLWQLLSRQVWARTRLMHDTWRDEFIYRHRTARNFQTRSYVHVTLNFDPSDVDE---PDSLSCRCLRLSDLYLAAGFADGTVRLFLLNS 176 ***************************************************9998...689***************************** PP SAP 180 rlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGraf 269 rlhv+t++p rdr+GrfsravsGivisdsrlvfat+dGdihva+i+g+g +++r+a++Gd+vndGalvdf+G+gr+wvGl+aGvpGraf GSBRNA2T00114613001 177 RLHVRTLRPPPRDRFGRFSRAVSGIVISDSRLVFATMDGDIHVAEINGVG-SHTRTAFVGDIVNDGALVDFTGCGRYWVGLFAGVPGRAF 265 ************************************************88.89************************************* PP SAP 270 hiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayv 358 hiWd+ ee++fvGGsltdPeavmGWh+ltelt ++Gr+r+++ etavaCt +r++v+dlrnqgv+++e+ee+ rGliv+++da+++ayv GSBRNA2T00114613001 266 HIWDCINEETTFVGGSLTDPEAVMGWHTLTELTMSLGRLRISGGETAVACTGWRIMVIDLRNQGVIIGEDEEQrRGLIVTGFDANDQAYV 355 *******************************************************************99888779*************** PP SAP 359 vvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss.... 443 ++dsrG+a+vrrv + e+vc+frv++ aqr+v+gCvn+ +al++aggv+rvW++++ ++ylys+rervgev+a+va+drhvav+ss GSBRNA2T00114613001 356 RMDSRGNAIVRRVRTQETVCEFRVSRaAQRRVMGCVNRLHALMCAGGVMRVWDVQRGGEYLYSFRERVGEVDAIVANDRHVAVASSssta 445 ************************999********************************************************9984444 PP SAP 444 dgtihlldfga 454 +tihl+dfga GSBRNA2T00114613001 446 VSTIHLWDFGA 456 468*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 5.07E-7 | 67 | 120 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 4.5E-5 | 72 | 109 | No hit | No description |
SuperFamily | SSF50978 | 7.02E-12 | 149 | 222 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.2E-9 | 149 | 223 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 7.02E-12 | 283 | 453 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.2E-9 | 360 | 454 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSSSSSASDN GNSSGGLSSV AGRSGGVFEA PSPSRPRHSA NDVWPEPFLE SLAVQVAVDA 60 SFSTSPRLYL LSMFNFSLVC TMWQAVSRSD HLWQLLSRQV WARTRLMHDT WRDEFIYRHR 120 TARNFQTRSY VHVTLNFDPS DVDEPDSLSC RCLRLSDLYL AAGFADGTVR LFLLNSRLHV 180 RTLRPPPRDR FGRFSRAVSG IVISDSRLVF ATMDGDIHVA EINGVGSHTR TAFVGDIVND 240 GALVDFTGCG RYWVGLFAGV PGRAFHIWDC INEETTFVGG SLTDPEAVMG WHTLTELTMS 300 LGRLRISGGE TAVACTGWRI MVIDLRNQGV IIGEDEEQRR GLIVTGFDAN DQAYVRMDSR 360 GNAIVRRVRT QETVCEFRVS RAAQRRVMGC VNRLHALMCA GGVMRVWDVQ RGGEYLYSFR 420 ERVGEVDAIV ANDRHVAVAS SSSTAVSTIH LWDFGAL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00114613001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013721150.1 | 0.0 | transcriptional regulator STERILE APETALA | ||||
Swissprot | Q9FKH1 | 0.0 | SAP_ARATH; Transcriptional regulator STERILE APETALA | ||||
TrEMBL | A0A397ZJ07 | 0.0 | A0A397ZJ07_BRACM; Uncharacterized protein | ||||
STRING | Bra035375.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11018 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 0.0 | SAP family protein |
Publications ? help Back to Top | |||
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