PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114410001

Common Name

GSBRNA2T00114410001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 220aa MW: 24773.4 Da PI: 9.7297

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114410001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	86	134	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L++l+ ++ ++ + K+ +A++Y+ Lq GSBRNA2T00114410001 86 FHNLSEKRRRSKINEKMKALQKLILNS---NNCRHIKSHCFDEAIKYLTLLQ 134 6************************...9**************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.579	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-13	85	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-7	86	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-12	86	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.25E-8	87	138	No hit	No description
SMART	SM00353	7.5E-6	88	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGSSDDSFCH LHPTNSLAFS GRFCHVLRQP NLPHPRETFP PLRCLTETFL SISVEQFLAQ 60 AMRSLKLEET NVLLRTRNGR NIDTQFHNLS EKRRRSKINE KMKALQKLIL NSNNCRHIKS 120 HCFDEAIKYL TLLQLQVQTL AVMNGLGLNP QRLPPVLPPT QTRINGTLEQ DLNFGTLLGA 180 SHSLTTFGRE DDSKSRSPLS TVYHKELVSF GLHQLGCSA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114410001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634585.1	1e-114	PREDICTED: transcription factor ALC-like isoform X2
TrEMBL	A0A3N6RFN6	1e-103	A0A3N6RFN6_BRACR; Uncharacterized protein (Fragment)
STRING	Bo4g137430.1	2e-50	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM30672	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.1	2e-41	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]