PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114270001

Common Name

GSBRNA2T00114270001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 141aa MW: 16101.8 Da PI: 10.7851

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114270001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	51.7	2.4e-16	10	93	2	89
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i+ed++ +++isws +n+nsfvv+d +++ +++Lpky +n++ F+ +L gF++v + ++ eF+h+ F+++ GSBRNA2T00114270001 10 FYIQLYQIIEDRSSDQIISWSkSNNNSFVVWDLKKLRSNILPKYSSvlGKNVTEFIAKLRSHGFRSVAKGPGE-------LEFSHDDFSRS 93 899****************8999**************9762269***************9999.......******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-18	4	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-13	6	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.85E-14	7	93	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.5E-6	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.0E-14	10	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.5E-6	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MVRKLSTSSF YIQLYQIIED RSSDQIISWS KSNNNSFVVW DLKKLRSNIL PKYSSVLGKN 60 VTEFIAKLRS HGFRSVAKGP GELEFSHDDF SRSPLMKKLM AKALSERIER FDAQIKALKC 120 RLKAKKASLK VETLFQNLSI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114270001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140178.1	1e-93	PREDICTED: heat shock factor protein HSF8-like
Refseq	XP_013745632.1	1e-93	heat shock factor protein HSF8-like
TrEMBL	A0A3P6CH73	1e-95	A0A3P6CH73_BRACM; Uncharacterized protein
STRING	Bra025635.1-P	5e-93	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	6e-27	Winged helix-turn-helix transcription repressor DNA-binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]