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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00114125001 | ||||||||
Common Name | GSBRNA2T00114125001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 309aa MW: 33746.9 Da PI: 9.096 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48 | 3.3e-15 | 78 | 160 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a ++ + ++g lk+++W ev++ + + +++++ +qCk++++ ++k+yk++k+ ++ s++++f++le GSBRNA2T00114125001 78 CWSEEATRVLINAWGDRFAEPGKGTLKQQQWHEVAEIVngsGQCKYTKTDVQCKNRIDTVKKKYKQEKAKNGP------SKWAFFKKLE 160 7*************************************88888889*************************97......58******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-23 | 77 | 162 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MEEEDETQSS PVDSSSPPAP SSPPVLPASN VTVASVTKPP PSSQSPSRNA LALAVHTPSV 60 TVNKNGRIGG GGGGRDDCWS EEATRVLINA WGDRFAEPGK GTLKQQQWHE VAEIVNGSGQ 120 CKYTKTDVQC KNRIDTVKKK YKQEKAKNGP SKWAFFKKLE SLIGGGGGGK APVVGARSSG 180 PMRWHFRKRS ASETESESEP EHSAESLPPP LQPLPKRLKM GESGVGEVAK AILGFTEAYE 240 KAESGKIKLM LELEKERMKF VKEMELQRMQ FLRTQMEITQ KNQEEERSKA RINDDDDRNV 300 KNNGDVSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.12010 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00114125001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ973845 | 2e-72 | DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013672984.1 | 1e-169 | trihelix transcription factor ASIL1 | ||||
Swissprot | Q9SYG2 | 1e-122 | ASIL1_ARATH; Trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A078JAZ0 | 1e-168 | A0A078JAZ0_BRANA; BnaC03g78260D protein | ||||
STRING | Bo3g184450.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8910 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54060.1 | 1e-92 | 6B-interacting protein 1-like 1 |
Publications ? help Back to Top | |||
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