PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00113080001

Common Name

GSBRNA2T00113080001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 329aa MW: 37451.6 Da PI: 5.7501

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00113080001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.8e-31	199	258	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ GSBRNA2T00113080001 199 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCFEDMSILITTYEGTHNHP 258 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.2E-33	184	260	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-28	192	260	IPR003657	WRKY domain
PROSITE profile	PS50811	29.092	194	260	IPR003657	WRKY domain
SMART	SM00774	1.9E-37	199	259	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	200	258	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDLSLRLEKE KDEERSKHSC EKEEEDDDDG ASEDKDEQMV KEDEIEDFFL SSRTRKEENE 60 REEMQIEMEH VKEENMRLRK LVEQTLQDYR QLEMKFPVID HTDKMDLETF LGAQAKARKK 120 GVERSASLPS VEGELGLSLS LQKKQKREES KAAESHNAQR YNSSSTIQGQ DTTQRVITSS 180 PGNRKARVSV RARCETATMN DGCQWRKYGQ KTAKGNPCPR AYYRCTVAPG CPVRKQVQRC 240 FEDMSILITT YEGTHNHPLP VGATAMASTA STSSFLLLDS SDNLSRPSYF QQNGNDNRSI 300 RSLINFDDPS SRGGDHVSSS QNRLNWMM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-23	186	262	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00113080001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430032	0.0	KF430032.1 Brassica rapa WRKY transcription factor 9 (WRKY9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590991.1	0.0	PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 9
Swissprot	Q9C9F0	1e-149	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A0D3CYV8	0.0	A0A0D3CYV8_BRAOL; Uncharacterized protein
STRING	Bo6g106590.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6736	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	1e-112	WRKY DNA-binding protein 9

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]