PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113009001
Common NameGSBRNA2T00113009001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 501aa    MW: 56796.5 Da    PI: 4.8745
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113009001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.74e-26192246155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  GSBRNA2T00113009001 192 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 246
                          68****************************************************8 PP
2Response_reg808.2e-27121181107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  GSBRNA2T00113009001  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETKRVMK 99 
                          89*********************.***************999999**********************5543.7***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                           ++ Ga d+l Kp+ ++el
  GSBRNA2T00113009001 100 GVQHGACDYLLKPIRMKEL 118
                          **************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-439133No hitNo description
SuperFamilySSF521722.13E-359131IPR011006CheY-like superfamily
SMARTSM004481.6E-3110122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.63111126IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.99E-3113126No hitNo description
SuperFamilySSF466892.69E-16189250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27190251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22192246IPR006447Myb domain, plants
PfamPF002492.0E-7194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETKRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGCY EGGADWFTRN DETHYLGGGE DVSFGRKRKE FDFEKKLLLQ  180
DESDPSSSTA KKARVVWSFE LHQKFVNAVN QIGCDHKAGP KKILDLMNVP WLTRENVASH  240
LQKYRLYLSR LEKGKELKCY SGGVKNMDSP PKDAEFSSLI HKGETDPKQL ASSSVSDPSS  300
DVHMPPKAKK TRVEFDPPIS SSAFDSLIPW DDVIEPKPTI LYESSFLQQQ PLPSQSPYVA  360
NSAPTLMEDE MKPSYETCVN ADEFLMPQDK NSTVILQDLV DLSAPSVISS NVTNDTETML  420
RSLNWELPES HHSGFIDTDL DFSWIQNEHF LANTSGNFQN FQFQDYSCSP SLLSELPPHP  480
WFGNEPEEYT LMIDNGLFIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17188251163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113009001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652271.10.0two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A0D3CYR00.0A0A0D3CYR0_BRAOL; Two-component response regulator
TrEMBLA0A3P6GWQ70.0A0A3P6GWQ7_BRAOL; Two-component response regulator
STRINGBo6g105120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  3. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]