![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00112945001 | ||||||||
Common Name | GSBRNA2T00112945001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1026aa MW: 115420 Da PI: 8.0024 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 167.9 | 1.6e-52 | 44 | 160 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 ++e ++rwlk+ e++ iL n+e+++lt +++++p+sgs++Lyn++++++frkDG++wk+kkdg+++ E+he+LKvg+ve+l+cyYah+e+ GSBRNA2T00112945001 44 YQEaHTRWLKPPEVHFILLNHERYRLTDKPPHKPTSGSVLLYNKRVLKFFRKDGHQWKRKKDGRAIAEAHERLKVGNVEALQCYYAHGEH 133 566699************************************************************************************ PP CG-1 91 nptfqrrcywlLeeelekivlvhylev 117 +p+fqrr+yw+L+ e+e+i lvhy++v GSBRNA2T00112945001 134 EPSFQRRIYWILDPEYEHIALVHYRDV 160 *************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 72.818 | 40 | 166 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.1E-72 | 43 | 161 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.4E-44 | 46 | 160 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.1E-8 | 457 | 549 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.52E-17 | 467 | 548 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 2.06E-6 | 467 | 549 | No hit | No description |
Pfam | PF01833 | 3.0E-9 | 467 | 547 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 1.5E-14 | 637 | 733 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.3 | 638 | 730 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.64E-14 | 640 | 733 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.65E-12 | 643 | 730 | No hit | No description |
Pfam | PF12796 | 7.8E-7 | 659 | 731 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.766 | 671 | 703 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0054 | 671 | 700 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 21 | 782 | 804 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 783 | 811 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.35E-6 | 783 | 890 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 6.1 | 838 | 860 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.833 | 839 | 868 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.013 | 840 | 859 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-4 | 861 | 883 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.865 | 862 | 886 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.2E-4 | 864 | 883 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1026 aa Download sequence Send to blast |
MERATEDHLT WHHYIHLRGY LSETVSQSRI LLAMQSEYDV STLYQEAHTR WLKPPEVHFI 60 LLNHERYRLT DKPPHKPTSG SVLLYNKRVL KFFRKDGHQW KRKKDGRAIA EAHERLKVGN 120 VEALQCYYAH GEHEPSFQRR IYWILDPEYE HIALVHYRDV SDGKEGKHSS GTVVQFSPNP 180 SDLFSSPVSI GTQNASYSHL IGDSTDIHQH HSSTSPGVNS DVVFKSNGVE TTPKGSGSSY 240 EFETREALKR LEEQLSLGDD NNVVHNESLD GLQFLDFSTD VDHLVPPLAT VHQRPESSSK 300 LGRCYGGYVG GAQYNVSTRA ENNRLGRCYG GYIGAEYHSN NLMLVKNDSG KPNLYIIDFR 360 YHGDQKAESW KDVLEACEAS IALNSEGSTP SSAKGLLTGM QEDSNLSYSN QADQATLLLP 420 QELASSFELP TCYSELGALA NNANNSRMEL PFEQVMNQTV AYKQKFTIQD ISPEWGYANE 480 TTKVIIIGSF LCDTTWSCMF GSTEVPFEII KEGVLRCQAP PCGPGKVNLC ITSGDGLSCS 540 QIKEFEYREK PDDTSCPWSS RDELLLLVRL VQTLVSDSKS NLEPWSHILE TILDGTATSS 600 STVDWLLQEL LKDKLDVWLS SRPRQDEDQT SCCSLSKQEQ GIIHMVAGLG FEWALHPILA 660 RGVSVDFRDI NGWSALHWAA RFGSEKLVAA LIASGASAGA VTDPTAQDPA GKTAASIAAS 720 NGHKGLAGYL SEVALTNHLS SLTLEETESS KDTAHLQAEM TLNSISERSP HSLKDTLAAV 780 RNAAQAVARI QAAFRAHSFR KRQQREAAMA SYFQEYGIYA DIKGVSAMSK QAFGNVKSYH 840 SAALSIQKNY RRYKRRKEFL LLRQKVVKIQ AHVRGYQIRK HYKVICWAVG ILDKVVLRWR 900 RKGAGLRGFR QDVEDSEEED ILKVFRKQKV DAAVNEAFSR VLSMANSPEA RQQYHRVLKR 960 YCQTKINETK YNGTKYWNEY FILVSRLSLG RQRHKEKVVM RMKICLTWLI WKMTVCLHFR 1020 GCSSV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 850 | 857 | RRYKRRKE |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00112945001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592349.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 4-like | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A0D3CYL9 | 0.0 | A0A0D3CYL9_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g103720.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
---|---|---|---|
|