PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00112333001 | ||||||||
Common Name | GSBRNA2T00112333001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 134aa MW: 15260.3 Da PI: 8.4502 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47 | 4.3e-15 | 76 | 132 | 2 | 53 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRa 53 r+R+t+t+ ql++ e+ +e+ + +p+ ++++e+ ++l ++ +++V++WFqNrR GSBRNA2T00112333001 76 RHRWTPTSMQLQIFESIYEEgSGTPKPQRIKEIMMELsqhgQVMDKNVYNWFQNRRP 132 89*****************99***********************************5 PP | |||||||
2 | Wus_type_Homeobox | 88.7 | 6.1e-29 | 75 | 133 | 2 | 60 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 +r+RWtPt+ Q++i e++y++G tP+ ++i++i +eL+++G+++dkNV++WFQNr+ R GSBRNA2T00112333001 75 HRHRWTPTSMQLQIFESIYEEGSGTPKPQRIKEIMMELSQHGQVMDKNVYNWFQNRRPR 133 589*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-12 | 68 | 133 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-11 | 70 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.143 | 72 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.4E-13 | 76 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.66E-7 | 76 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MERGSQNGEY DGRVMTEEQM EILRKQIAMY AVICGQLVSH ESLSSKLPVS SGMNPTGGGY 60 FDSIVASPST YKISHRHRWT PTSMQLQIFE SIYEEGSGTP KPQRIKEIMM ELSQHGQVMD 120 KNVYNWFQNR RPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00112333001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018466782.1 | 7e-81 | PREDICTED: putative WUSCHEL-related homeobox 10, partial | ||||
Swissprot | Q9LM84 | 4e-62 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A3P6BBN2 | 6e-95 | A0A3P6BBN2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D6Y5 | 6e-95 | M4D6Y5_BRARP; Uncharacterized protein | ||||
STRING | Bra012245.1-P | 9e-96 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-64 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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