PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112009001
Common NameGSBRNA2T00112009001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 456aa    MW: 50361 Da    PI: 5.622
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112009001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35271192103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ ++e++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F +g+k
  GSBRNA2T00112009001  27 FLSKTYDMVDDPLTDEVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPER---------WEFANDGFVRGQK 107
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k +
  GSBRNA2T00112009001 108 QLLKSIIRRKPS 119
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.8E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-3322116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MRSICESVPA ANSSSASTTV VNSIPPFLSK TYDMVDDPLT DEVVSWSSGN NSFVVWNVPE  60
FAKQFLPKYF KHNNFSSFVR QLNTYGFRKV DPERWEFAND GFVRGQKQLL KSIIRRKPSQ  120
VQPQKKPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QGTEHHLQNV  180
GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FSQQSSEGNQ HISESNKKRR LPVEDQKNSG  240
SHGVNGLSRQ IVRYQSSVNE SANSVLQQIQ SMSSSRGCHE PLSNNHGSFL LGDVPNVSDN  300
GSSSNGAYGV AFTDVSSNGA MKPHDPYAQA DLLAPRQGAA AASGSSSSDL VGCETDNGEC  360
LDPMMVVLDE STILGRDGTI NELLPGGEDS LWEQFFGEST ETGNIDELVS GSMDNEMIME  420
QLGLQSNLRN VLRNNQQMNH LTEQMGLLTS DALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262211624129Heat shock factor protein 1
5d5v_B2e-262211624129Heat shock factor protein 1
5d5v_D2e-262211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112009001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891850.0AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735734.10.0heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A397ZZQ70.0A0A397ZZQ7_BRACM; Uncharacterized protein
STRINGBra001071.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]