PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00111848001 | ||||||||
Common Name | GSBRNA2T00111848001, LOC106439083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20329.9 Da PI: 4.9203 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.7 | 3e-18 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA EL +LC+aev +++fs+ +k y y GSBRNA2T00111848001 11 VQDTNTKQVTFSKRRLGLFKKAGELATLCNAEVGIMVFSPGNKPYPY 57 6788899*********************************9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-25 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.175 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.98E-31 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.4E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-20 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGRRKIKMEK VQDTNTKQVT FSKRRLGLFK KAGELATLCN AEVGIMVFSP GNKPYPYGSP 60 SFELVAERYN NESEDSDSCE TSGNGRGNRA RQEKRICKRL NSIMEQVEAE KKRGEDFEHQ 120 LETAGGEERF DKPIEELSLE ELEEYEGKMM DMLDNIQGNI SGMEVSSTLV IMSKDTQNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5140 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269|PubMed:20631316}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00111848001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189233 | 0.0 | AC189233.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013O20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134914.1 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_013735893.1 | 1e-130 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 9e-58 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A398A7D7 | 1e-128 | A0A398A7D7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CAI0 | 1e-128 | M4CAI0_BRARP; Uncharacterized protein | ||||
STRING | Bra001209.1-P | 1e-129 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 3e-76 | AGAMOUS-like 91 |
Link Out ? help Back to Top | |
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Entrez Gene | 106439083 |
Publications ? help Back to Top | |||
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