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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00111777001 | ||||||||
Common Name | GSBRNA2T00111777001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 391aa MW: 42958.5 Da PI: 6.4064 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C++++ +lC +C + H+ H++ GSBRNA2T00111777001 4 MCDFCGDQRSMVYCRSDSACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 26.3 | 1.6e-08 | 46 | 90 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++ ++++ C + ++ lC++C ++H++ H++++ GSBRNA2T00111777001 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnstssndHKRQT 90 68*****************************88899999998876 PP | |||||||
3 | CCT | 60.3 | 6.5e-21 | 333 | 376 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ GSBRNA2T00111777001 333 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 376 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.9E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 43 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.41E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 0.27 | 48 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.338 | 333 | 375 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-15 | 333 | 375 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MGYMCDFCGD QRSMVYCRSD SACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNS TSSNDHKRQT ISCYSGCPSS SELASIWSFC SELAGESACE 120 QEMGMMNIDD DGQTKQNCNE DKKDETSSAA QATNASFAKR SPAQITSEKK LINITCCGFG 180 SGDYKLWPPT SCPLKNYHDV GVSEDDFYGN LGMDEVDLAL DNYEELFGTA FNTSVHLFGQ 240 GGVDSLFQKH QQAAAPEGGN LVQPAESNDD SFMSSKTEPI ICYTSKPAHS NISFSGVTGE 300 SSAGDFQECG ASSSVQLTGE PPWHPQTSQS VTRNNAVMRY KEKKKARKFD KRVRYASRKA 360 RADVRRRVKG RFVKAGEAYD YDPLTPTRSY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00111777001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237331 | 9e-81 | AC237331.1 Arabidopsis lyrata clone JGIFAFI-57H17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134989.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_018512576.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A3P6A8Q4 | 0.0 | A0A3P6A8Q4_BRACM; Uncharacterized protein | ||||
STRING | Bra001264.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |
Publications ? help Back to Top | |||
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