PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111613001
Common NameGSBRNA2T00111613001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 359aa    MW: 40962.4 Da    PI: 8.1191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111613001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-1323971288
                         HTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3 12 ksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                          s+ + +p  f ++h       g++   +  ++l++  s  +Wevk+  ++++    lt GW++F+  + Lk+gD+v+F++dg+ 
  GSBRNA2T00111613001 23 HSH-INIPIAFYSKHikgttneGYV---NEVVKLRSdASDLTWEVKM--DGRR----LTHGWEKFATGHCLKVGDIVIFRHDGDL 97
                         444.89*********9877765444...235778776888*******..9998....***********************88753 PP
2B361.41.5e-19147239397
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++++lk++ l lp +f +++g +++e  +++l++e+ + W++ ++y k+ g ++++ GW++F++an+ +++D+++Fkl++ +++++
  GSBRNA2T00111613001 147 VARVTESNLKKDALFLPQHFSRSNGFVNRE-CEIILMNEDREPWTLLMKYYKTNGYVYIRHGWRSFCQANRKRANDVLTFKLVQ-TGTKP 234
                          56689999****************888655.59*************************************************98.77778 PP

                          EEEEE CS
                   B3  93 vvkvf 97 
                          v++++
  GSBRNA2T00111613001 235 VLQLR 239
                          88876 PP
3B3391.5e-12258346190
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                          f++ +++ + lks+ l+lp +fa ++g+k+ +  +++l d++g + +  l+ + k gr+ l++G  +F+ a g+k+g+++ ++l+++ +e
  GSBRNA2T00111613001 258 FVTLTLKQYQLKSCKLCLPVPFAMANGIKNVR--EIILVDRHGVRRTTSLKPDDKYGRMRLGEGCIKFCIASGVKTGESFRLELIKEkEE 345
                          67778899******************999666..8********999999988999999**************************987444 PP

                          E CS
                   B3  90 f 90 
                           
  GSBRNA2T00111613001 346 D 346
                          3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-196109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-199114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77111107IPR003340B3 DNA binding domain
CDDcd100177.50E-1412104No hitNo description
SMARTSM010191.3E-1814107IPR003340B3 DNA binding domain
PfamPF023625.7E-82596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20138241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-22140243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.634145241IPR003340B3 DNA binding domain
SMARTSM010194.7E-25145242IPR003340B3 DNA binding domain
CDDcd100176.44E-21145239No hitNo description
PfamPF023624.3E-18147239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-13250344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-12255344IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-11257345No hitNo description
PROSITE profilePS508638.163258357IPR003340B3 DNA binding domain
PfamPF023621.1E-10258347IPR003340B3 DNA binding domain
SMARTSM010191.3E-14258358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MANGSASSPI NPHFFQPLLP GFHSHINIPI AFYSKHIKGT TNEGYVNEVV KLRSDASDLT  60
WEVKMDGRRL THGWEKFATG HCLKVGDIVI FRHDGDLLFH VTPFGPSCCE IQYNDDDDDD  120
DDDDHDEKYH QQHTREAESS PDNSCFVARV TESNLKKDAL FLPQHFSRSN GFVNRECEII  180
LMNEDREPWT LLMKYYKTNG YVYIRHGWRS FCQANRKRAN DVLTFKLVQT GTKPVLQLRA  240
SVYNRGSSSS SSTSQDRFVT LTLKQYQLKS CKLCLPVPFA MANGIKNVRE IILVDRHGVR  300
RTTSLKPDDK YGRMRLGEGC IKFCIASGVK TGESFRLELI KEKEEDTVNH LLKFSSKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111613001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135996.20.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A3P6ABS10.0A0A3P6ABS1_BRACM; Uncharacterized protein
STRINGBo3g063950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-90B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]