PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111591001
Common NameGSBRNA2T00111591001, LOC106356771
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 627aa    MW: 71795.2 Da    PI: 9.7497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111591001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09465507140
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          +++W++eE ++l +++ ++++g   +W+ I+ ++g+gRt +++
  GSBRNA2T00111591001 465 KQPWSKEEIDKLRKGIIKYPKGisrRWEVISDYIGTGRTVEEI 507
                          79*************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.02E-1995190IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.4E-20105210IPR001623DnaJ domain
SMARTSM002711.4E-17110186IPR001623DnaJ domain
PROSITE profilePS5007618.014111194IPR001623DnaJ domain
PfamPF002262.7E-17111191IPR001623DnaJ domain
CDDcd062572.42E-10113183IPR001623DnaJ domain
PRINTSPR006253.5E-9116134IPR001623DnaJ domain
PRINTSPR006253.5E-9134149IPR001623DnaJ domain
PRINTSPR006253.5E-9166186IPR001623DnaJ domain
PROSITE patternPS006360171190IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.8E-6459508IPR009057Homeodomain-like
PROSITE profilePS500906.26460515IPR017877Myb-like domain
SuperFamilySSF466891.72E-7461508IPR009057Homeodomain-like
SMARTSM007173.1E-6464517IPR001005SANT/Myb domain
PfamPF002491.9E-7465507IPR001005SANT/Myb domain
CDDcd001671.94E-5467507No hitNo description
SMARTSM007171.1E-5566618IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-7569620IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-4570615IPR009057Homeodomain-like
PROSITE profilePS500906.806570616IPR017877Myb-like domain
CDDcd001676.66E-5570616No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MPRGRSDSAI KLITYSEELV DGKPFYAFSN SRPVKALNRE PAGHAFHSAA LKLHGFAEKP  60
TDGEGSHKKV GDDDKDEEYV FPSFNPYANN KGRKKKKKPG GTQKQQDHQQ DHYALLGLRN  120
LRYLATEDQI KKSYREAALK HHPDKQHAAL LLAEETEEAM EAKKDEIGSR FRAIQEAYEV  180
LMDPTKRKIF DSTDEFDDED CSPEEFFKVF GPAFKRIAKL SATASQRVPD LGDENTKLKD  240
VEKFYSFWYG FKSLREFPNG GKHDLEKADS RQERRWMGRE NAKETAKARK EDDVRIRNLV  300
DNAYRIDPRI TKREEEEKAK KQRKKEAKVM AEKKREEEAA EKEKMRKEEV KESAEKLKKD  360
KEKERKLLLK ERNRLRTLSA HVLAQRLVSK EDVENLCMSL NIQQLQNLND TMENKQGVEL  420
ANVIKDHEAN SKEKESEKAN SKEKESEKAN CVDAEPTKLD NTKKKQPWSK EEIDKLRKGI  480
IKYPKGISRR WEVISDYIGT GRTVEEILKA TKTVLLQKPD SAKAFDTFLE KRKPTVSIAS  540
PLSTREEELG ESLPMENNGE ASGSSDADGW SSVQERALVQ ALKTFTKVTS QRWERVAAAV  600
PGKTMVQCKK KFAELKELIR SKKTGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111591001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651950.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A398A8C30.0A0A398A8C3_BRACM; Uncharacterized protein
STRINGBra001404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-142DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]