PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111477001
Common NameGSBRNA2T00111477001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 493aa    MW: 55045.1 Da    PI: 4.4207
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111477001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36441352102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sws+n+nsf+v+d+ +fak++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  GSBRNA2T00111477001  44 FLSKTYDMVDDPATDSIVSWSANNNSFIVWDPPQFAKDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQK 124
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+k 
  GSBRNA2T00111477001 125 HLLKTITRRKP 135
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3937128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.28E-3539133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6340133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDRGNRTSTN GGEGGSVTME STEIQPSPQP QPVAVLTGNA PPPFLSKTYD MVDDPATDSI  60
VSWSANNNSF IVWDPPQFAK DLLPKNFKHN NFSSFVRQLN TYGFRKVDPD KWEFANEGFL  120
RGQKHLLKTI TRRKPAHGHG HQQSQHSIGQ NSSVSSCVEV GKFGLKEEVE RLKRDKNVLM  180
QELVRLRQQQ QSTDNQLQTM VQRLQGMENR QQQLMSFLAK AVQSPHFLSQ FLQQQNQQNE  240
GSRRISDTSK KRRFKRDGIV SNNKDSASPD GQIVKYQPPM HEQAKAMFSQ LMKMEPYKAG  300
DDGFLLGNST TTTTSTEGTE MEISANNITG ISLQEIPTAS EIQSSSSPSG ATPENVTVAE  360
FPTPDEAIPS PDVLSLPEFA DMLQENIAEV PPENFLETNM EDLSPILDSD LFNNDDLPFD  420
IDDILRDPDL EPSVDDYASL FQDILMSSPV PDDMEVTPVD DRTKDSETEQ KQMDNLTQQM  480
GLLSPETIDL SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-264213318120Heat shock factor protein 1
5d5u_B1e-264213327129Heat shock factor protein 1
5d5v_B1e-264213327129Heat shock factor protein 1
5d5v_D1e-264213327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111477001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013733845.10.0heat stress transcription factor A-1d-like
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A3P6FA180.0A0A3P6FA18_BRAOL; Uncharacterized protein
STRINGBo5g048950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]