PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111272001
Common NameGSBRNA2T00111272001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 478aa    MW: 53059.8 Da    PI: 6.315
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111272001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.7e-35271172101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d++++e++sws n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k
  GSBRNA2T00111272001  27 FLVKTYEMVDDSSTDEIVSWSPNNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQK 107
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  GSBRNA2T00111272001 108 HLLKNIHRRK 117
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3623116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-6223116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3723116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNGALGNSSA SVNGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSPNN NSFIVWNHAE  60
FSRLLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH  120
SHSQPPVSSA DQERAALQEH MDKLSREKAA IEAKLFKFKQ HKSTAKHNFD EMAEHVEDME  180
KRQEKLMGFL ETAMRNPTFI KSFGRKVEEL DLDVSAYNKK RRLPQGEQSK PPSEDSHLDN  240
SSGSSRPESG NIFHQNFSSK LRLVLSPAVS DLNMVSHSIQ SSNEGGASPK GILSGSDPKT  300
TQTRREGLPF APEALELADT GSCPGILLLN DKTIPEPLQQ MITSSEETDG SFSCHLNLTL  360
ASAPLPDKTA SQIAKTTHKS QEIGRVTELN FNSIETSSSE KNRGQQEVAA GGKQANAAPP  420
ARVNDVFWEQ FLTERPGSFD NEEASSTYRE NPCEEQEEKR NGHVMSRNTK NIEQLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2531161129Heat shock factor protein 1
5d5v_B5e-2531161129Heat shock factor protein 1
5d5v_D5e-2531161129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.56480.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111272001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013742862.10.0heat stress transcription factor A-5-like
RefseqXP_013742863.10.0heat stress transcription factor A-5-like
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A3P6BZV80.0A0A3P6BZV8_BRACM; Uncharacterized protein
TrEMBLM4EVB90.0M4EVB9_BRARP; Uncharacterized protein
STRINGBra032752.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]