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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00111014001 | ||||||||
Common Name | GSBRNA2T00111014001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 257aa MW: 28789.2 Da PI: 5.8305 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.5 | 4.1e-14 | 32 | 112 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Liea ++ +l+rg+l++++W+ev++++ + g ++ +qCk++++ l+k+yk +k+ ++ ++ +f++l+ GSBRNA2T00111014001 32 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------SWCFFERLD 112 *************************************8544445577******************9998876.......488998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-25 | 30 | 113 | No hit | No description |
SMART | SM00595 | 0.0013 | 39 | 119 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDTTPETQSK SQSQSGGGGG SHRLPPGRED WWSEDATATL IEAWGDRYVH LSRGNLRQND 60 WKEVADAVNS RHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PSSSWCFFER LDFLIGPVAL 120 KKSTGGAGAL KSPLTKPISS ESSLDDDDDD DDDDDVEGDW GFVARKHRRV EDEDLCPDPR 180 EGSSCRELAR AILKLGEVYE RIESAKQGMM IELEKQRMEA AKEIELQRMN MLMDMQMELE 240 KSKLGKRRAA ASGKKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14521 | 1e-113 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00111014001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353551 | 3e-89 | AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587708.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 1e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0D3CL99 | 0.0 | A0A0D3CL99_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g136850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-113 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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