PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111014001
Common NameGSBRNA2T00111014001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 257aa    MW: 28789.2 Da    PI: 5.8305
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111014001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.54.1e-1432112286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+++ + +Liea  ++  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+  ++       ++ +f++l+
  GSBRNA2T00111014001  32 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------SWCFFERLD 112
                          *************************************8544445577******************9998876.......488998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2530113No hitNo description
SMARTSM005950.001339119IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDTTPETQSK SQSQSGGGGG SHRLPPGRED WWSEDATATL IEAWGDRYVH LSRGNLRQND  60
WKEVADAVNS RHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PSSSWCFFER LDFLIGPVAL  120
KKSTGGAGAL KSPLTKPISS ESSLDDDDDD DDDDDVEGDW GFVARKHRRV EDEDLCPDPR  180
EGSSCRELAR AILKLGEVYE RIESAKQGMM IELEKQRMEA AKEIELQRMN MLMDMQMELE  240
KSKLGKRRAA ASGKKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.145211e-113seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111014001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535513e-89AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587708.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D3CL990.0A0A0D3CL99_BRAOL; Uncharacterized protein
STRINGBo5g136850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-113sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]