PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00110982001

Common Name

GSBRNA2T00110982001, LOC106452705

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 285aa MW: 31090.7 Da PI: 7.0623

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00110982001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.8	1.5e-30	87	140	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl GSBRNA2T00110982001 87 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 140 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.6E-20	84	144	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	84	143	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-30	86	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-24	88	140	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	90	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MREDDSDWFS RWEQDLPSPD ELIPLSQSLI SPDLALAFDI RSPGQQPLHH HQSAPPTPSQ 60 ANSSAEFAAD SSDLGGAGDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL 120 MSVDGLTREN VASHLQKYRL YLKRMQGGLS SGGGGGSDPA TDRLFASSPV PAHFLHPNRS 180 DHFMPSFVPI ATLQQQQQMV AAANSHLQPP QFHHRSQIAA AHFGSPTANG KFDASFLARQ 240 TQTQQRMSTT PTLHSPVSNY VEDLESANAN GGRTVLTLFP TRDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-32	87	143	1	57	Transcription factor LUX
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00110982001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	2e-53	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013750329.1	0.0	transcription factor MYBC1
Swissprot	O22210	3e-66	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0D3CLC9	0.0	A0A0D3CLC9_BRAOL; Uncharacterized protein
STRING	Bo5g137150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-127	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	106452705

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]