PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110892001
Common NameGSBRNA2T00110892001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 539aa    MW: 58589.2 Da    PI: 7.0819
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110892001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.51e-19156242186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++ +++  +s s++p+f+++e
  GSBRNA2T00110892001 156 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVseRCEKLIKSVEQCKNKIDNLKKRYKLERHRISSG-GTSASHWPWFKKME 242
                          5*************************************77788999*************************99.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-21154244No hitNo description
Gene3DG3DSA:3.40.1160.101.9E-63289530IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.96E-51297530IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.51E-116299531No hitNo description
PfamPF006966.1E-21300510IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MASCDDDFSL LGEDQSNPNQ HHHHHHNQVL HHAPYAPRRF APKLSNQQIH VPHHQSNGDE  60
DDEHHDVVAS SAFHGVNPFS ADENSNPYDN NSNAAVEGGD EDLDANRSRI GGGVRLEKRQ  120
SQEELSDGGT TNGGGSFKRP RTSSSSAGEY RKDREEWSDA AITCLLDAYS DKFTQLNRGN  180
LRGRDWEDVA ATVSERCEKL IKSVEQCKNK IDNLKKRYKL ERHRISSGGT SASHWPWFKK  240
MEEIVGNSMT TKGASDEDRS GSSLGNAAKP ARRYPLVTYN PGVQINNVKS KATSNPRWRR  300
VVLKISGAAL ACTGPNNIDP KIVGLIAREV AMACRLGVEV AIVVGSRNLF CGGTWITATG  360
LDRTTAYHIS MMASVMNSVL LQSSLEKMGV QARLQTGIAV QGVGEPYNRQ RATRHLDKGR  420
VVIFGGIGAT LGNPLLSSDA AAALRAIDIN AEAMVKGTNV EGVYDCHSQD SNATFEHITF  480
HDLASRGLTT MDTMALNFCE ENSIPVVVFN FLEAGNITKA LCGEQVGTLI DRTGRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A5e-552905301239Uridylate kinase
3ek5_B5e-552905301239Uridylate kinase
3ek5_C5e-552905301239Uridylate kinase
3ek5_D5e-552905301239Uridylate kinase
3ek5_E5e-552905301239Uridylate kinase
3ek5_F5e-552905301239Uridylate kinase
3ek6_A5e-552905301239Uridylate kinase
3ek6_B5e-552905301239Uridylate kinase
3ek6_C5e-552905301239Uridylate kinase
3ek6_D5e-552905301239Uridylate kinase
3ek6_E5e-552905301239Uridylate kinase
3ek6_F5e-552905301239Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.279690.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110892001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583546.10.0PREDICTED: uncharacterized protein LOC106292491
TrEMBLA0A0D3CLJ40.0A0A0D3CLJ4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FGQ40.0A0A3P6FGQ4_BRAOL; Uncharacterized protein
STRINGBo5g137800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]