PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00110589001

Common Name

GSBRNA2T00110589001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 143aa MW: 17219.1 Da PI: 11.3919

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00110589001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.6	3.2e-29	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+++LH+ Fv +v++LGG+ kAtPk+i+++m+vk+Ltl+hvkSHLQ+YR GSBRNA2T00110589001 15 PRLRWATDLHQYFVYVVNRLGGERKATPKKIVQAMGVKSLTLSHVKSHLQMYRN 68 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-27	11	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-14	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-22	15	70	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MEKPIVRFYT KSKMPRLRWA TDLHQYFVYV VNRLGGERKA TPKKIVQAMG VKSLTLSHVK 60 SHLQMYRNKK RRDSVQAERR MRREMRWRQS QQHLQIYERL RDAIEFMQNQ RRLSDNKEKT 120 IEFLKPSNKA MEVSCKSLFQ SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-15	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00110589001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628412.1	4e-95	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A3P6B1Y6	1e-93	A0A3P6B1Y6_BRAOL; Uncharacterized protein
STRING	Bra029503.1-P	4e-86	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	7e-41	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]