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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00110345001 | ||||||||
Common Name | GSBRNA2T00110345001, LOC106412230, WRKY69.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 280aa MW: 30909.8 Da PI: 4.6946 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.4e-29 | 70 | 128 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY eHnh+ GSBRNA2T00110345001 70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACEHNHP 128 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-31 | 61 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.755 | 64 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-25 | 65 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.9E-35 | 69 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-25 | 71 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MHRRGIQESD DEEDETYNDV VPESPSSCED SKISKPTPKK SRRNMEKRVV SVPIADVEGS 60 KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPSKLMIT 120 YACEHNHPFP SAANNKSHHH HRTSSVVLKA AKKEENMEEE DDEEEEEVTA AAEEPVGLDL 180 SHVDSPLLLG GCYGELNEFG WFYDASISSS SGSSSYGGSF LDVTLESGFS VGGEEDESLY 240 GDLGDLPDCA SVFRRGTVAT EEQRQRCDFG AVPFCDSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-21 | 47 | 131 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-21 | 47 | 131 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00110345001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246583 | 0.0 | KC246583.1 Brassica napus WRKY transcription factor 69.1 (WRKY69.2) mRNA, complete cds. | |||
GenBank | KC246584 | 0.0 | KC246584.1 Brassica napus WRKY transcription factor 69.2 (WRKY69.2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306790.1 | 0.0 | probable WRKY transcription factor 69 | ||||
Swissprot | Q93WV5 | 1e-158 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | A0A3P6C2T0 | 0.0 | A0A3P6C2T0_BRAOL; Uncharacterized protein | ||||
TrEMBL | V9LY66 | 0.0 | V9LY66_BRANA; WRKY transcription factor 69.2 | ||||
STRING | Bo4g108250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12478 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.1 | 1e-153 | WRKY DNA-binding protein 69 |
Link Out ? help Back to Top | |
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Entrez Gene | 106412230 |
Publications ? help Back to Top | |||
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