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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00110227001 |
Common Name | GSBRNA2T00110227001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 219aa MW: 25232.3 Da PI: 8.6958 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00110227001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.5 | 8.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
GSBRNA2T00110227001 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 59
68***********************************************96 PP
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2 | K-box | 55.7 | 2.2e-19 | 88 | 156 | 14 | 82 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82
e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++ q+eksl+ +Rs+K el+ +q+ +l++
GSBRNA2T00110227001 88 LEELKKEMDIMVKKIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLGKLKE 156
68899***********************************************************99986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009909 | Biological Process | regulation of flower development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ NGRLYEFSSS 60 EMEKTIERYG DFRNEYFVLG RPQVQPYLEE LKKEMDIMVK KIDLLEVQQR KLMGQGLGSC 120 SVAELQEIDI QIEKSLRIVR SRKAELYADQ LGKLKEMCFS HTCYEKILCF QEIRERLLRP 180 LLPVTLHTEK GEPEGGYRTK HSSEVETDLF IGLPVARP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
5f28_C | 1e-17 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 1e-17 | 1 | 72 | 1 | 72 | MEF2C |
6byy_A | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 9e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6c9l_A | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |