PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109796001
Common NameGSBRNA2T00109796001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 294aa    MW: 32889.9 Da    PI: 7.051
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109796001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36241142101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+++++ed++++++isw+e+g+sfvv+++++fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k
  GSBRNA2T00109796001  24 FLIKTFNLVEDPSIDDVISWNEDGSSFVVWNPTDFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFRRGEK 104
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  GSBRNA2T00109796001 105 RLLKEIQRRK 114
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5620113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.1E-3521113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVSDNGEPMM VITNESQRSV PTPFLIKTFN LVEDPSIDDV ISWNEDGSSF VVWNPTDFAR  60
DLLPKHFKHN NFSSFVRQLN TYGFKKVVPD RWEFSNDFFR RGEKRLLKEI QRRKLTPQAA  120
AVTPPPEVVA AAAAAQRVQT TKTVVSPSSS AEDQAVSPGG LSVELLEENE KLRSQNIQLN  180
RELTQMKSLC DNIFSLMSNF SGSPPDQNCS PGPSSSHERM KPVEFFPAKR FSGETEVEEE  240
ASHRLFGVSI GLKRTRSEGV QVKAVGERSG GGGEKEETPW LRHYNRTNQR VCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-232411329129Heat shock factor protein 1
5d5v_B5e-232411329129Heat shock factor protein 1
5d5v_D5e-232411329129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.181260.0leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109796001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151322.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-134HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A3P5YHT00.0A0A3P5YHT0_BRACM; Uncharacterized protein
STRINGBra010049.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-126heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]