PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00109227001

Common Name

GSBRNA2T00109227001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1623aa MW: 178470 Da PI: 7.307

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00109227001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.6e-10	854	895	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e ++ +++G++ +k+Ia+ + +t +c+++++k GSBRNA2T00109227001 854 PWTSEEKETFLSMLAMHGKD-FKKIASFLT-QKTTADCIDYYYK 895 8***************99.****9.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.62E-14	837	898	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.171	850	901	IPR017884	SANT domain
SMART	SM00717	1.0E-8	851	899	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-8	853	895	IPR001005	SANT/Myb domain
CDD	cd00167	2.53E-7	854	896	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-7	854	900	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.832	1064	1115	IPR017884	SANT domain
SMART	SM00717	2.0E-5	1065	1113	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.01E-8	1068	1115	IPR009057	Homeodomain-like
CDD	cd00167	5.53E-5	1069	1110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1623 aa Download sequence Send to blast
MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSPS SSSSHREFSR WGGSADFRRP 60 SSHGKQGGRY QFVEESSHGY TSSRSSARMF ENDYYRPSAP RGDWRYTRNC RDDRVPLSQK 120 DWRSNTWEMN NGSYRAFDRP CGVRNGRRSV EERPPPASDT HTTVVNSWEQ PNSAQQMDIE 180 LCTPVRTVRS KNEQKFLDQR QSLPSDPHSD GLGLFDRPSS VNSYENKECS PAKQSNGLMR 240 GRRLADDNSL DPPILNAEIE GTRNQILLKD MHDNKLHGVS DLDGVRENGK ENSLGATGKL 300 PMWTRSGSFA SQSSGFSHSS SLKSLGAVDS SDGKHKILPK TVAVTQTSSG DATACAKTTV 360 SEEMSSRKKQ RLGWGEGLAK YENKKVDVNT TEDGTDLLEN SAEEMHSLNK NIADKSPTAT 420 NAPDYGSPTT PSSVACNSSP DKSSAKAAIG ASDVSNMCRS PSPVSSIHLE RLPINIEELD 480 NISMERVGCL LNELLGTDDP GTGDSSSVQL TSMKKLLAWK GDILKAVEMA ESEIDLLESK 540 QRALKLECGR QCRVVGPSSD LPEGDENVQQ EASCVLGLKA VAFSVAQTLV RDTVHQAVSA 600 KVPVRIIEDS CREVNALPQF LATVGSNEDI LPIPSTKADS NQETVDLSSA DDSMVSDEDL 660 LCAKLLSTNK IYASESSQVF NKLLPRDFSS FDESRLPGRC QRQFDSHVKE KIAERIEVLR 720 AREKILLLQF KAFQLAWKKD VRQLASAKYQ PKGNKKTEVF PYAKNGGHLK LSQPVRLRLY 780 SSAQRRDSVA STTELVSYMK KLLKNTRLKP FRDILRMPAM ILDEKERVRS RFISSNGLIE 840 DPCDVEKERT MINPWTSEEK ETFLSMLAMH GKDFKKIASF LTQKTTADCI DYYYKNHKSD 900 CFAKIKKQRS FGKEGKHTYM LAPTKKWKRE MGAASLDILG AVSIIAANAG KVASTRQTSS 960 KRITLRGCSS SSSLQRDGNY SEGYSHSFDF PRKRTLGADV VAVGPLSSEQ INSCLRTSVN 1020 SREGCMDHLK FAPAAKKPRI SHTTHNENSN EDDDSCSEES CGETGPIHWT DAERSAFIQG 1080 FSLFGKNFAS LSRFVRTRSP DQCRVFFSKV RKCLGLECIQ SGSRNVSASA SVDNANEGGG 1140 SDLDGPCATE SNSGICNNGV SSKIGLNTLT SPLNMNQEGA NHSGFENVEA GLSRSEQENG 1200 LALLRLKDGT NLVSTANING DSEPCRDLVD INTVESHCQA ADQMNSNDSS DQLSMEIDEG 1260 NLTPIAVSSD PLYCGSIVLS NNIVEKGSGC EGAVVPKQSS KMQDGVMQAV NRTRNSGLEA 1320 EAASSSFRYP ECLHHVPIEE DLVGVSVPQG DSNCHIESEL PNPLVVQTNN MGWQFSEVNL 1380 DFDRRSQVLG HVKPEQNGQL HATSTESCQI PWISFTQDPS RIIRSKSDLI VKAQRTGEAF 1440 SLKKCTSSAT KPLTVFQKDG RSGHSRSHSF SLSDTKRLDK NGDVKLFGTV LTADENGSKQ 1500 KHNPGGSIRP SSTLSRDHET GHQYINQQHL QNVPITSYGF WDGNRIQTGL TSLPESAKLV 1560 ASYPEALTTH QKQQVVSTKE IQLDVSGILS FGKQIEDRSE VSSGKDKGKI GGEVNGVAEA 1620 AT*

Sequence ? help Back to Top

Protein Sequence Length: 1623 aa Download sequence Send to blast

MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSPS SSSSHREFSR WGGSADFRRP  60
SSHGKQGGRY QFVEESSHGY TSSRSSARMF ENDYYRPSAP RGDWRYTRNC RDDRVPLSQK  120
DWRSNTWEMN NGSYRAFDRP CGVRNGRRSV EERPPPASDT HTTVVNSWEQ PNSAQQMDIE  180
LCTPVRTVRS KNEQKFLDQR QSLPSDPHSD GLGLFDRPSS VNSYENKECS PAKQSNGLMR  240
GRRLADDNSL DPPILNAEIE GTRNQILLKD MHDNKLHGVS DLDGVRENGK ENSLGATGKL  300
PMWTRSGSFA SQSSGFSHSS SLKSLGAVDS SDGKHKILPK TVAVTQTSSG DATACAKTTV  360
SEEMSSRKKQ RLGWGEGLAK YENKKVDVNT TEDGTDLLEN SAEEMHSLNK NIADKSPTAT  420
NAPDYGSPTT PSSVACNSSP DKSSAKAAIG ASDVSNMCRS PSPVSSIHLE RLPINIEELD  480
NISMERVGCL LNELLGTDDP GTGDSSSVQL TSMKKLLAWK GDILKAVEMA ESEIDLLESK  540
QRALKLECGR QCRVVGPSSD LPEGDENVQQ EASCVLGLKA VAFSVAQTLV RDTVHQAVSA  600
KVPVRIIEDS CREVNALPQF LATVGSNEDI LPIPSTKADS NQETVDLSSA DDSMVSDEDL  660
LCAKLLSTNK IYASESSQVF NKLLPRDFSS FDESRLPGRC QRQFDSHVKE KIAERIEVLR  720
AREKILLLQF KAFQLAWKKD VRQLASAKYQ PKGNKKTEVF PYAKNGGHLK LSQPVRLRLY  780
SSAQRRDSVA STTELVSYMK KLLKNTRLKP FRDILRMPAM ILDEKERVRS RFISSNGLIE  840
DPCDVEKERT MINPWTSEEK ETFLSMLAMH GKDFKKIASF LTQKTTADCI DYYYKNHKSD  900
CFAKIKKQRS FGKEGKHTYM LAPTKKWKRE MGAASLDILG AVSIIAANAG KVASTRQTSS  960
KRITLRGCSS SSSLQRDGNY SEGYSHSFDF PRKRTLGADV VAVGPLSSEQ INSCLRTSVN  1020
SREGCMDHLK FAPAAKKPRI SHTTHNENSN EDDDSCSEES CGETGPIHWT DAERSAFIQG  1080
FSLFGKNFAS LSRFVRTRSP DQCRVFFSKV RKCLGLECIQ SGSRNVSASA SVDNANEGGG  1140
SDLDGPCATE SNSGICNNGV SSKIGLNTLT SPLNMNQEGA NHSGFENVEA GLSRSEQENG  1200
LALLRLKDGT NLVSTANING DSEPCRDLVD INTVESHCQA ADQMNSNDSS DQLSMEIDEG  1260
NLTPIAVSSD PLYCGSIVLS NNIVEKGSGC EGAVVPKQSS KMQDGVMQAV NRTRNSGLEA  1320
EAASSSFRYP ECLHHVPIEE DLVGVSVPQG DSNCHIESEL PNPLVVQTNN MGWQFSEVNL  1380
DFDRRSQVLG HVKPEQNGQL HATSTESCQI PWISFTQDPS RIIRSKSDLI VKAQRTGEAF  1440
SLKKCTSSAT KPLTVFQKDG RSGHSRSHSF SLSDTKRLDK NGDVKLFGTV LTADENGSKQ  1500
KHNPGGSIRP SSTLSRDHET GHQYINQQHL QNVPITSYGF WDGNRIQTGL TSLPESAKLV  1560
ASYPEALTTH QKQQVVSTKE IQLDVSGILS FGKQIEDRSE VSSGKDKGKI GGEVNGVAEA  1620
AT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-17	812	902	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-17	812	902	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16532	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00109227001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013663146.1	0.0	uncharacterized protein LOC106367835
TrEMBL	A0A3N6PNK1	0.0	A0A3N6PNK1_BRACR; Uncharacterized protein
STRING	Bo8g080840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]