PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00109000001

Common Name

GSBRNA2T00109000001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 308aa MW: 34503 Da PI: 9.8579

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00109000001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.8e-16	40	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ + ++++qCk+k+e+++kry+ + +++ + s++p++++l+ GSBRNA2T00109000001 40 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVARHVssraSHSKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYSRLD 123 5***********************************87766667788999*************99997......46**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-20	38	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEDGDSNQEH PQPLTTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWVLR 60 NRAKLKGQDW EDVARHVSSR ASHSKSPKTQ TQCKNKIESM KKRYRSESAT ADGSSWPLYS 120 RLDHLLRGNA STSVQPQPQA VLPLNCSAPL LLLEPPSLAV THPPQQPPAA QMSHGSNGVG 180 TIKEEGFKDD HKPERATEMD TDSSTPVLCR EKAKVRPKKV RRRYKEEKEE IAGSIRWLAE 240 VVMRTERARM ETMKEIEKMR AEAEVKRGEM DLKRTEIMAN TQIEIARLFA ASVQKGGVDS 300 SLRIGRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00109000001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600436.1	0.0	PREDICTED: trihelix transcription factor ASIL1 isoform X2
TrEMBL	A0A3P6GKK7	0.0	A0A3P6GKK7_BRAOL; Uncharacterized protein
STRING	Bra007069.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-143	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]