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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00108409001 | ||||||||
Common Name | GSBRNA2T00108409001, LOC106431263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 38201.6 Da PI: 6.5647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4e-14 | 132 | 178 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L GSBRNA2T00108409001 132 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 178 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.45E-4 | 132 | 181 | No hit | No description |
Pfam | PF00010 | 1.1E-11 | 132 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-14 | 133 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 133 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-13 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.5E-5 | 214 | 263 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MYAMKEEDCL QNFHNLQDYQ DQFLLHHHPQ ILPWSSLPSF DPTYFPSNPT RYPDSVPHFN 60 RRASSSSSFD YTDGFVSPPS MDHHHHPNHL RVLSEALGPI MRRGSSFGFD DEIMGKLSAQ 120 EVMDAKALAA SKSHSEAERR RRERINTHLA KLRSILPNTT KTDKASLLAE VIQHMKELKR 180 QTSLITDTSQ IPTECDDLTV DSAYNDEEGN LMIRVSFCCE DRTELMHDII NALKSLRLRI 240 HKAEIATVGG RVKNVLFLSR EDDDEYRRNF DGVDVDNDDE EKRFNRASSI KEALKAVIDK 300 CVNNNDDNNN LDKSSSGSIK RQRTSKMVNR CYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | ERRRRE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, specific for vascular tissues. {ECO:0000269|PubMed:20220754}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00108409001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058840 | 0.0 | AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. | |||
GenBank | AY079033 | 0.0 | AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. | |||
GenBank | AY086383 | 0.0 | AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence. | |||
GenBank | DQ205679 | 0.0 | DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618371.1 | 0.0 | PREDICTED: transcription factor AIG1-like | ||||
Swissprot | Q9LS08 | 0.0 | BH032_ARATH; Transcription factor AIG1 | ||||
TrEMBL | A0A0D3AVW5 | 0.0 | A0A0D3AVW5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DFG2 | 0.0 | A0A3P6DFG2_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g138630.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13949 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 0.0 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Entrez Gene | 106431263 |