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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00108360001 | ||||||||
Common Name | GSBRNA2T00108360001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 400aa MW: 45859.2 Da PI: 6.2085 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.3 | 2.7e-25 | 79 | 158 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWee+s+kmre+gf rsp +C++kw+nl k++kk ++ ++ s ++++++++e GSBRNA2T00108360001 79 WVQDETRILIALRREMDGLFNTSKSNKHLWEEISSKMREKGFDRSPAMCTDKWRNLLKEFKKAAKDQQV-----SGKMSHYKEIE 158 **************************************************************9988775.....34566777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 69 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.746 | 71 | 135 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.0E-6 | 75 | 137 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.78E-5 | 75 | 147 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.46E-28 | 77 | 141 | No hit | No description |
Pfam | PF13837 | 1.1E-18 | 78 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MFVSSEKPRS PIDFYKDDDD NNNPSSPTSR DINMMIDGDL QPPPHHQHQH QHQILLGDNS 60 SSEDHEINNK APKKRAETWV QDETRILIAL RREMDGLFNT SKSNKHLWEE ISSKMREKGF 120 DRSPAMCTDK WRNLLKEFKK AAKDQQVSGK MSHYKEIEDL LRERSKKVAT SYKSVTAPSK 180 VDSFMQFTDK GFEDTGISFA SVEANGRPTL NLERQLDHDG HPLAIASADV VTANGVPPWN 240 WREPAGNGKS SDGQPFVGKI ITVKYGDYTR RVGIDGTAEA IKEAIRSAFR FRTRRAFWLE 300 DEEQVVRSLD RDMPLGNYTL HVDEGIAVRV CHYDESDPLP VHQEEKVFYT EEDYREFLGR 360 RGWTCLREFD GGFRNIESMV RNVDSMDDLQ PGVLYRGMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-40 | 73 | 156 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19626 | 1e-133 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00108360001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129574.1 | 0.0 | PREDICTED: trihelix transcription factor GT-4 | ||||
Swissprot | Q9LU92 | 0.0 | TGT4_ARATH; Trihelix transcription factor GT-4 | ||||
TrEMBL | M4F5J8 | 0.0 | M4F5J8_BRARP; Uncharacterized protein | ||||
STRING | Bra036354.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25990.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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