PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00107863001 | ||||||||
Common Name | GSBRNA2T00107863001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 34777.2 Da PI: 6.8829 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.8 | 2.3e-33 | 166 | 223 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ GSBRNA2T00107863001 166 EDGYRWRKYGQKAVKNSIYPRSYYRCTTQRCNVKKRVERSFQDPTVVITTYEGQHNHP 223 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 2.3E-100 | 1 | 312 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 1.0E-34 | 150 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-29 | 157 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.456 | 160 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 165 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 166 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSNETKDLYS YQYLTSLSLY ELMNLPTSTP SSYGNNGFVP SSYPLADCFQ SSPGAAYDSL 60 LHTTLGVSPS SSEVFNSLVD QESKHDVTND VIGETPTRVS ASSSSSEADL PGEDSGKSQR 120 KRELVGDGRE ENQSSKKVGK TKKKEEKKQR EPRVSFMTKS EVDHLEDGYR WRKYGQKAVK 180 NSIYPRSYYR CTTQRCNVKK RVERSFQDPT VVITTYEGQH NHPLPTNLRG SSAAAAMYSA 240 DFMTPGSFTH EMFRSSAYTS GGSAAAALDY GYEQSSYGSV NANPNAHQEY RQGGEYELLK 300 EIFPSIFFKQ EP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 156 | 225 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 156 | 225 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00107863001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013688691.1 | 0.0 | probable WRKY transcription factor 28 | ||||
Refseq | XP_022574621.1 | 0.0 | probable WRKY transcription factor 28 | ||||
Swissprot | Q8VWJ2 | 1e-170 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A3P6FMA9 | 0.0 | A0A3P6FMA9_BRAOL; WRKY transcription factor | ||||
STRING | Bo1g019260.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 1e-143 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
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