PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107653001
Common NameGSBRNA2T00107653001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 752aa    MW: 85226.9 Da    PI: 5.7644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107653001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-15442486146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r  WT+eEd++l  av ++G ++W ++a+++  gRt+ qc +rw+k
  GSBRNA2T00107653001 442 RREWTPEEDDQLRTAVGLFGEKDWQSVANEIE-GRTGTQCSNRWNK 486
                          678*****************************.************8 PP
2Myb_DNA-binding40.66e-13504546346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +W+ eEd++l  a + +G ++ ++Ia+ ++ gRt  qc+ rw +
  GSBRNA2T00107653001 504 KWSSEEDKRLRVALTFFGAKNYNKIAQFVP-GRTQSQCRARWKD 546
                          8*****************************.***********75 PP
3Myb_DNA-binding34.35.5e-11555598246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT+eE  +  +avk++G  +W+++a+++   Rt kqc  rw +
  GSBRNA2T00107653001 555 GSWTEEEVTKYNEAVKEHGDSNWSKVAAHVY-SRTSKQCSRRWET 598
                          78****************************9.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071716294385IPR001005SANT/Myb domain
PROSITE profilePS500904.67295383IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-5298313IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-5359395IPR009057Homeodomain-like
SuperFamilySSF466891.18E-7382438IPR009057Homeodomain-like
PROSITE profilePS500907.48384436IPR017877Myb-like domain
SMARTSM007170.021388438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-10396447IPR009057Homeodomain-like
SuperFamilySSF466897.69E-19421488IPR009057Homeodomain-like
PROSITE profilePS5129421.621437492IPR017930Myb domain
SMARTSM007176.7E-14441490IPR001005SANT/Myb domain
PfamPF002496.0E-14442486IPR001005SANT/Myb domain
CDDcd001674.59E-12444488No hitNo description
Gene3DG3DSA:1.10.10.607.7E-17448494IPR009057Homeodomain-like
PROSITE profilePS5129417.399497552IPR017930Myb domain
SMARTSM007171.2E-10501550IPR001005SANT/Myb domain
PfamPF002492.1E-11504546IPR001005SANT/Myb domain
CDDcd001672.14E-9504545No hitNo description
Gene3DG3DSA:1.10.10.608.9E-18504554IPR009057Homeodomain-like
SuperFamilySSF466895.29E-20528601IPR009057Homeodomain-like
SMARTSM007171.7E-9553602IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-14555599IPR009057Homeodomain-like
PROSITE profilePS5129412.963555604IPR017930Myb domain
PfamPF002492.1E-10555599IPR001005SANT/Myb domain
CDDcd001676.54E-10556599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MDREIMYDSD DDDIGEDLDD LRRACIVSDS DSNSGGVLQS DSENEDDFEM LRSVKTQLAS  60
SPDHPMGLSS LPSDSDSQDD FEMLRSLKRQ LALPMDQEDE DDETLFAICK RFSSYENSGV  120
EGTLMNESSP KQVHASCNEP SSEILSRSNT CESFSEVVEA SVEPHLTLAS ASSSTFPESA  180
QAFVDAIRKN RSYQKFLRRK LGEIEATIEK NEKLQKDVKI IDGFTVSCKR RMKQQAFSQG  240
KDPRFELISI RRPRTHDSSE GTGEKTSPLT LGPLENPCVA SYRMALEEYP VTVCRTNWSA  300
KENEDLAKGL RQQLQETLIR EATERSSDLE GCSDDIDSIL ESVSNLEITP EMIRQFLPKV  360
NWDQLDIKNR SAAECEARWM SSEDPLINQG PWTAAEDDYI RLITQNKSVT DWLDVAVSLG  420
TNRNPFQCLA RYQRSLNTDI LRREWTPEED DQLRTAVGLF GEKDWQSVAN EIEGRTGTQC  480
SNRWNKSLVP SRKRVGKSNS KEAKWSSEED KRLRVALTFF GAKNYNKIAQ FVPGRTQSQC  540
RARWKDSLDP RLNFGSWTEE EVTKYNEAVK EHGDSNWSKV AAHVYSRTSK QCSRRWETLN  600
PHLKLLKREA MRLRREATIG NFVDRESERP LLVASDFLAL AERSFESEPV LKKKRKTRSK  660
KADAEGESEA VCADTERQPK RRRKGLERCS GDTGKEKKQR RKRKAVAGTS SDNSTVTTNS  720
NCSHVKVGIE KLKPRRKVSA VVPIENQDAP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-213516046155MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-213516046155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1681703RRKGLERCSGDTGKEKKQRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107653001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550321.10.0snRNA-activating protein complex subunit 4-like
TrEMBLA0A3P6F9J30.0A0A3P6F9J3_BRAOL; Uncharacterized protein
STRINGBra013415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]