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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00107566001 | ||||||||
Common Name | GSBRNA2T00107566001, LOC106446858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 208aa MW: 23610.7 Da PI: 5.7424 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.6 | 3.6e-16 | 30 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv +ps v ++ l++p +f+ g+ + s +tle++ g + ++kl ++ +++++l++GW+eF++a+ + eg f+ F ++g+s+f GSBRNA2T00107566001 30 FFKVVLPSTVKRNM-LMIPPRFVILQGS--TLSEFVTLETPVGFRRSIKL--KRIGEEIWLQGGWSEFAEAHSISEGHFLFFDYKGNSTF 114 89999999998876.********66664..48889***************..**********************************9999 PP ..EEEEE- CS B3 91 elvvkvfr 98 v++f+ GSBRNA2T00107566001 115 --SVMIFN 120 ..888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-23 | 23 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-14 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.238 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-17 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-14 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVTTRQTKAR VTTASHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE 60 FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFN 120 VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL 180 NDVDEINSIK LLEEEEGKRV FRGQQFF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.18469 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00107566001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240102 | 1e-123 | AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013744123.1 | 1e-152 | B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 6e-92 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A3P6F1G9 | 1e-142 | A0A3P6F1G9_BRAOL; Uncharacterized protein | ||||
STRING | Bra022374.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-94 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106446858 |
Publications ? help Back to Top | |||
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