PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107424001
Common NameGSBRNA2T00107424001, LOC106377211
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 266aa    MW: 28221.3 Da    PI: 5.6697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107424001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-051511911055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  GSBRNA2T00107424001 151 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191
                          678889999*********999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11143201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-7149197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-4149195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGDTADDQAM VEAPGVPSFS ELLMLSDGFL SSSEDHRREI NGGDGGEDSF GFVFSGTSGS  60
KMLCFSGDCQ NGDESLFQEP SFPSGVSVSD PSSCTINTCK NSNDTCTDER SIKSSNKKRT  120
GSGNGQNMDH NQKPSKKCKK NQDKSTVGIA KVRKERLGER IAALQQLVSP YGKTDAASVL  180
HEAMGYIKFL QDQIQVLCSP YLINYSLDGG AVTGDVTPGK KVRDLRSRGL CLAPVSSTVH  240
VENSNGADLW SPATASMGHT MSPSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.91970.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107424001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672854.10.0transcription factor bHLH113 isoform X1
SwissprotQ9LT671e-141BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A0D3CIF80.0A0A0D3CIF8_BRAOL; Uncharacterized protein
TrEMBLA0A3N6SWN50.0A0A3N6SWN5_BRACR; Uncharacterized protein
STRINGBo5g114070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]